Sequence and phylogenetic analysis
Sequence and Phylogenetic Analysis of Wild Type Rubella virus isolated in Iran
... The rubella virus genome is ~10,000 nucleotides and encodes five protein products, including three virion proteins: the C or capsid protein and two envelope glycoproteins, E1 and E2. The E1 gene sequence has been ...
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A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis
... a sequence database for 80 genera of Basidiomycota from the Hymenomycete lineage (sensu Swann & Taylor 1993) for a small region of the mitochon- drial large subunit rRNA ...
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groESL Sequence Determination, Phylogenetic Analysis, and Species Differentiation for Viridans Group Streptococci
... and sequence between ...nucleotide sequence identities) than that of the groEL sequences ...nucleotide sequence identities). Phylogenetic analysis of the groES and groEL genes yielded ...
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Microbial diversity analysis, sequence isolation and phylogenetic analysis of south indian gundaru river basin
... Phylogenetic analysis We generated a cladograme protein directed tree (Penny et ...rRNA sequence of bacterial isolates from Gundaru river basin. The phylogenetic tree of these sequences shows ...
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Phylogenetic Analysis of Salmonella, Shigella, and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
... 2002 Phylogenetic analysis of about 200 strains of Salmonella, Shigella, and Escherichia coli was carried out using the nucleotide sequence of the gene for DNA gyrase B (gyrB), which was determined ...
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Molecular Characterization and Phylogenetic Analysis of Growth Hormone cDNA Sequence from the Acipenser Persicus
... of phylogenetic variation between Persian sturgeon (Acipenser persicus) with other Acipenseridea regarding to the Growth Hormon (GH) ...cDNA sequence of Persian sturgeon contains a 645 nucleotide open ...
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Phylogenetic analysis of eight sudanese camel contagious ecthyma viruses based on B2L gene sequence
... and phylogenetic analysis The terminal unreliable nucleotides of the obtained B2L gene sequences were first trimmed-off automatically and both forward and reverse sequences aligned in the Gen- eious® ...
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Molecular Phylogenetic Analysis of Indonesian Fusarium Isolates from Different Lifestyles, based on ITS Sequence Data
... molecular phylogenetic analysis of the Fusarium species complex in Indonesia, based on ITS rDNA sequence data, was carried out in order to analyze relationships among the Fusarium strains from ...
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The first complete genome sequence of HCV 1a from Pakistan and a phylogenetic analysis with complete genomes from the rest of the world
... for analysis, of full length sequence of Hepatitis C virus, subtype ...length sequence of 3a, (1) 3i and subtype of a full-length sequence is not mentioned in ...For Phylogenetic ...
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Sequence and Phylogenetic Analysis of SSU rRNA Gene of Five Microsporidia
... Two phylogenetic trees based on SSU rRNA sequences had been constructed by using Neighbor-Joining of Phylip software and UPGMA of ...by analysis of phylogenetic relationship, length, G?C content, ...
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Sequence and phylogenetic analysis of H7N3 avian influenza viruses isolated from poultry in Pakistan 1995 2004
... Muhammad A Abbas 1,3 , Erica Spackman* 2 , David E Swayne 2 , Zaheer Ahmed 1 , Luciana Sarmento 2 , Naila Siddique 1 , Khalid Naeem 1 , Abdul Hameed 3 and Shafqat Rehmani 4 Abstract Background: Avian influenza virus ...
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Sequence and phylogenetic analysis of the gene for surface layer protein, slpA, from 14 PCR ribotypes of Clostridium difficile
... this sequence information on slpA, which is strongly related to serogroup designation and complements ribotyping, which is based on non-coding DNA that is subject to different evolutionary ...the sequence ...
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Sequence and Phylogenetic Analysis of Membrane (M) Gene of Infectious Bronchitis Viruses Isolated in Iran during 2014 - 2015
... gene sequence differences among our 12 isolates were between 1 and 12% which contravenes the fact states the M proteins are well conserved within each coronavirus ...glycosylation sequence Asn-Cys-Thr was ...
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Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes
... the phylogenetic tree. A detailed analysis of each of the 76 genes by tree construction revealed a mosaic pattern in the strains HL025PA1, SK187, and ...
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Target Sequence Capture of Nuclear-Encoded Genes for Phylogenetic Analysis in Ferns
... Samples, library prep, and sequencing We chose 24 fern samples to evaluate the efficacy of our approach (Table 1). Taxa were selected from across fern diversity with a slight emphasis on Dennstaedtiaceae, Lindsaeaceae, ...
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The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes
... the sequence alignment and comparison, the phy- logenetic analyses, the relative tests of evolution, and drafted the ...end sequence searches, BAC shotgun library construction and sequencing, ...
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Citrate Synthase Gene Sequence: a New Tool for Phylogenetic Analysis and Identification ofEhrlichia
... partial sequence of the HGE agent gltA was first determined by using degenerated primers F3 and R1b designed after the alignment of the conserved regions of gltA among Rickettsia prowazekii, Bartonella henselae, ...
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A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data
... Our phylogenetic analyses imply that the most basal extant scleractinians are azooxanthellate solitary corals from deep-water, their divergence predating that of the robust and complex ...
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Mitochondrial DNA Sequence Variation and Phylogenetic Analysis in Japanese Individuals from Miyazaki Prefecture
... used. Sequence comparison revealed the existence of 90 diŠerent haplotypes in 120 variable positions, and of these 82, were unique, 6 were observed twice and 2 were observed three ...of sequence variations ...
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Evolutionary Relationship of Wheat Protein Disulphide Isomerase (PDI) Gene Promoter Sequence Based on Phylogenetic Analysis
... Keywords: Protein Disulfide Isomerase (PDI) Promoter; Wheat; Phylogenetic Analysis 1. Introduction Wheat is adapted to temperate regions of the world and was one of the first crops to be domesticated. ...
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