Sequence types
Endemic dissemination of different sequence types of carbapenem-resistant <em>Klebsiella pneumoniae</em> strains harboring <em>bla</em><sub>NDM</sub> and <em>16S</em> <em>rRNA methylase</em> genes in Kerman hospitals, Iran, from 2015 to 2017
... Results: Thirty-seven (21.14%) isolates along with sequence types (STs): ST43, ST268, ST340, ST392, ST147, and ST16 were harbored bla NDM . ST43 in 2015 and ST268 during 2016–2017 were the most frequent STs ...
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Changes of predominant species/biovars and sequence types of Brucellaisolates, Inner Mongolia, China
... common sequence type during the low incidence stage ...between sequence types of the strains might be the differences in species and biovars dis- ...
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Multilocus Sequence Typing of Bartonella henselae in the United Kingdom Indicates that Only a Few, Uncommon Sequence Types Are Associated with Zoonotic Disease
... Bartonella henselae is one of the most common zoonotic agents acquired from companion animals (cats) in industrialized countries. Nonetheless, although the prevalence of infections in cats is high, the number of human ...
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Streptococcus pyogenes Isolates Causing Severe Infections in Norway in 2006 to 2007: emm Types, Multilocus Sequence Types, and Superantigen Profiles
... multilocus sequence typing and screened for known streptococcal pyrogenic exotoxin (Spe) genes, smeZ, and ...prevalent sequence types (STs) were STs 52, 28, and ...emm types 28, 77, and 87, ...
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Differing lifestyles of Staphylococcus epidermidis as revealed through Bayesian clustering of multilocus sequence types
... The population structure of S. epidermidis has not been fully revealed. eBURST analysis of multilocus sequence typing (MLST) data places the majority of S. epidermidis sequence types (STs) into one ...
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Multilocus Sequence Typing of Corynebacterium ulcerans Provides Evidence for Zoonotic Transmission and for Increased Prevalence of Certain Sequence Types among Toxigenic Strains
... is sequence typing of ...multilocus sequence typing (MLST) to type ...related sequence types (STs) might be associated with the presence of the diphtheria toxin gene, which encodes diphtheria ...
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fimA Genotypes and Multilocus Sequence Types of Porphyromonas gingivalis from Patients with Periodontitis
... six types (genotypes I, Ib, II, III, IV, and V) on the basis of different nucleotide sequences, with fimA genotypes II and IV being prevalent in isolates from patients with ...the sequence types ...
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Multilocus Sequence Types Associated with Neonatal Group B Streptococcal Sepsis and Meningitis in Canada
... Population genetics methods have been applied to GBS strains to investigate genotypes associated with disease, assess genetic variation within genotypes, and examine the role of recombination in the generation of new ...
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Identification of sequence types among the M nontypeable group A streptococci
... Although it is clear that all the designated STs were different from each other and from the published sequences of the genes for M proteins, there appeared to be some sequence relatedne[r] ...
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Single Locus Sequence Based Typing of bla OXA 51 like Genes for Rapid Assignment of Acinetobacter baumannii Clinical Isolates to International Clonal Lineages
... multilocus sequence typing (MLST) reference method and 3-locus sequence typing ...distinct sequence types (STs) and to one singleton ...
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Erythromycin Susceptibility and Genomic Regions Characterization of Campylobacter coli
... multilocus sequence typing (MLST) schemes have been developed that generate DNA sequence-based (hence totally portable) data that can be used to subtype strains from diverse sources (9, 10, ...and ...
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Ciprofloxacin resistant Escherichia coli in Central Greece: mechanisms of resistance and molecular identification
... multilocus sequence typing has revealed the presence of nine sequence types; ST131 and ST410 were the most prevalent and were exclusively correlated with hospital and health care associated ...
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Sequence Based Typing of adeB as a Potential Tool To Identify Intraspecific Groups among Clinical Strains of Multidrug Resistant Acinetobacter baumannii
... for sequence analysis of an internal region of the adeB gene in order to investigate whether this gene contains polymorphic sites that are potentially useful for sequence-based identification of ...
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Genotypes of Invasive Pneumococcal Isolates Recently Recovered from Italian Patients
... pspA sequence types associated with PNSP isolates in Italy varied little from those of antibiotic-resistant clones cir- culating within the United ...
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Multilocus Sequence Typing Analysis of Human and Animal Clostridium difficile Isolates of Various Toxigenic Types
... multilocus sequence typing (MLST) scheme was developed to study the genetic relationships and popu- lation structure of 72 Clostridium difficile isolates from various hosts, geographic sources, PCR ribotypes, and ...
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Delineating anaplasma phagocytophilum ecotypes in coexisting, discrete enzootic cycles
... rDNA sequence types of ...particular sequence type, referred to as Ap-variant 1, appears to exploit only white tailed deer (Odocoileus virginianus) as a reservoir host, whereas other variants, ...
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Prevalence and Sequence Diversity of a Factor Required for Actin Based Motility in Natural Populations of Burkholderia Species
... population, with no obvious association with specific lineages. (see Fig. S2 in the supplemental material). All of the Austra- lian isolates had sequence types distinct from that of B. mallei (ST40) (31), ...
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Sequence Variation of Epstein-Barr Virus: Viral Types, Geography, Codon Usage, and Diseases
... consensus sequence for each chosen geographic group and the consensus of all the type 1 sequences did not reveal simple groups of SNPs that were uniquely definitive of each geographic group; instead, a complex ...
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Group A Streptococcal Vir Types Are M Protein Gene (emm) Sequence Type Specific
... new types, STBL18 and STPK14, are part of the emm33 and emm70 ...gene sequence for M70 was first described as a local ST, type STBSB75, by Relf et ...translated sequence of STBL18 and emm70 is ...
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Derivation of HLA types from shotgun sequence datasets
... coverage, sequence read length, and sequence ...faux sequence reads. For each sequence format, 20 such data sets were generated and these were queried in triplicate, yielding a total of 360 ...
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