Simple Sequence Repeats (SSR) markers
Allelic variation of simple sequence repeats markers linked to PPV resistance in Chinese apricot
... ‘Zhejiangxing’ cv. of South China group was tested as a homozygous genotype of the 83 allele. CONCLUSION In conclusion, a high level of genetic variation was found in Chinese apricot accessions by the six SSR ...
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CHARACTERIZATION OF ELITE MAIZE INBRED LINES FOR DROUGHT TOLERANCE USING SIMPLE SEQUENCE REPEATS MARKERS
... Nineteen Simple Sequence Repeats (SSRs) primers (Table 2) were chosen based on repeat unit and bin location to provide uniform coverage of the entire maize genome from the Maize GDB database (Maize ...
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A genome wide analysis of simple sequence repeats in maize and the development of polymorphism markers from next generation sequence data
... SSRs were widely concerned and used as an ideal tool for deciphering genetic variability, not only due to the abundance within a genome, the random occurrence, but also the high degree of polymorphisms [27]. The analysis ...
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Genetic diversity in tomato (Solanum lycopersicum L.) genotypes revealed by simple sequence repeats (SSR) markers
... SSR markers. Out of 20 markers used, 14 SSRs were polymorphic and a total numbers of 22 SSR alleles were generated by 14 SSR markers, out of which 19 were polymorphic and 3 were monomorphic, with an ...
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Genetic variability of sorghum landraces from lower Eastern Kenya based on simple sequence repeats (SSRs) markers
... on simple sequence repeats (SSRs) ...SSR markers. All markers were polymorphic with polymorphism information content (PIC) value ranging from ...
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Evaluation of genetic diversity in Magnaporthe grisea populations adapted to finger millet using simple sequence repeats (SSRs) markers
... ABSTRACT Finger millet blast caused by Magnaporthe grisea(anamorph: Pyricularia grisea) is a great threat to finger millet production worldwide. Genetic diversity and population structure of 72M. griseaisolates ...
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Computational and Experimental Characterization of Physically Clustered Simple Sequence Repeats in Plants
... regions. Simple se- In species where BAC or P1 libraries are already avail- quence repeats are a manifestation of the deeper non- able, they represent a ready source of SSRs that are random nature of ...
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Marker-assisted sex differentiation in date palm using simple sequence repeats
... Microsatellite markers containing simple sequence repeats (SSRs) are a valuable tool for genetic ...microsatellite markers that could be used to differentiate between male and female ...
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In Silico Exploration of Cannabis sativa L Genome for Simple Sequence Repeats (SSRs)
... crosatellite markers for ...cleotide repeats were the most abundant ...tri-nucleotide repeats AAG/CTT ...transcriptome. Repeats larger than tri-nucleotide were also observed in the hemp genome ...
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Simple sequence repeat markers that identify Claviceps species and strains
... Simple sequence repeats (SSRs) The microsatellites were mined from 12 assembled genomic sequences from data stored at NCBI [21]. Prim- ers were designed for 267 SSR sequences but only the first 192 ...
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Characterization of simple sequence repeats (SSRs) from Phlebotomus papatasi (Diptera: Psychodidae) expressed sequence tags (ESTs)
... Microsatellites are effectively randomly distributed throughout the genome and can represent transcribed ele- ments. Although, SSRs derived from transcribed ESTs can still maintain allelic variability comparable with ...
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Analysis of Simple Sequence Repeats Information from Floral Expressed Sequence Tags Resources of Papaya (Carica papaya L )
... specific markers among female, her- maphrodite and male plants of various papaya ...for markers-assisted selection of desirable traits (disease resistance) in ...
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Analysis of simple sequence repeats in rice bean (Vigna umbellata) using an SSR-enriched library
... Here we report the construction of an SSR-enriched genomic library from DNA extracted from pooled young leaf tissues of 22 rice bean genotypes and developing SSR markers. In 433,562 reads generated by a Roche 454 ...
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Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines
... In silico mapping of EST-SSRs to the chicken genome The predicted location of the orthologue of each EST-SSRs was predicted by a similarity search against the chicken genome. Because synteny is highly conserved in ...
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Fourteen simple sequence repeats newly developed for population genetic studies in Prosopis africana (Fabaceae–Mimosoideae)
... Findings: Leaf samples from 15 trees were used to develop simple sequence repeat (SSR) markers. Size-selected fragments from genomic DNA were enriched for repeats and the library was analyzed ...
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Keragaman Genetik Inbrida Jagung QPM Dan Provit-A Berdasarkan Marka SSRs (Simple Sequence Repeats)
... hybrid. Simple sequence repeats (SSR) have been extensively utilized as genetic markers to study the genetic diversity, cultivar identification, and gene ...
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Mining of single nucleotide polymorphism (SNP) and simple sequence repeats (SSRs) from EST tropical fruits
... expressed sequence tags (ESTs) sequence from tropical ...ESTs sequence from year after ...and simple sequence repeat (SSR) from EST tropical ...(15,957 repeats) followed by ...
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Genetic characterization and relatedness among autochthonous grapevine cultivars from Northeast Turkey by Simple Sequence Repeats (SSR)
... 25 autochthonous grapevine cultivars from Northeast Anatolia in Turkey together with two well-known standard cultivars, Cabernet Sauvignon and Merlot were fi ngerprinted using six pairs of SSR primers to assess their ...
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Gene diversity and identification of putative hybridizing parents for root rot resistance in cassava using simple sequence repeats
... SSR markers and the rank-sum of the genotypes were subjected to cluster analysis for the identification of genotypic groups with which easy hybridization is possible so as to generate large number of new varieties ...
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Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame
... specific markers were reported until the development of the first SSR markers by Dixit et ...2014). Simple sequence repeats are widely used in plant molecular genetic studies because ...
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