Structural and functional annotation
Gene3D: comprehensive structural and functional annotation of genomes
... comprehensive structural and functional annotation of most available protein sequences, including the UniProt, RefSeq and Integr8 ...main structural annotation is generated through ...
7
Gene3D: Comprehensive structural and functional annotation of genomes
... comprehensive structural and functional annotation of most available protein sequences, including the UniProt, RefSeq and Integr8 ...main structural annotation is generated through ...
5
Heterologous expression of plasmodial proteins for structural studies and functional annotation
... for the development of new drugs. However, it is obvious from the nearly 60% of hypothetical proteins in the para- site genome that have not yet been annotated, that rela- tively little of the biology of the parasite is ...
20
Structural and functional annotation of the porcine immunome
... visualize a transcriptome network for porcine generic immune response (Figure 2). Using this correlation network, we then identified clusters with GO term annotation enrichment related to immune response. ...
16
Structural and Functional Annotation of Uncharacterized Protein in Bacillus anthracis A2012
... Several bioinformatics tool for identification of: motif and domain search, transmembrane analysis, membrane protein topology, sequence similarity, protein solubility, [r] ...
10
Structural and functional annotation of the MADS-box transcription factor family in grapevine
... VviSVP subfamily. The MADS-box of VviSVPS proteins are highly similar to VviSVP and they were named in this way because of this similarity. They also showed similarities with the tomato JOINTLESS [46] that controls ...
23
SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation
... the annotation is required for a better understanding of the role of specific genes and proteins in the complex networks underlying biological processes in the ...validated functional and structural ...
9
Structural and functional annotation of hypothetical proteins of human adenovirus: prioritizing the novel drug targets
... by HAdV, functional annotation of these HPs might open avenues for prioritizing novel drug targets [4]. In-silico strategies to annotate the hypothetical proteins are cost effective and fast enough to ...
6
Utilizing NMR Spectroscopy and Molecular Docking as Tools for the Structural Determination and Functional Annotation of Proteins
... 71 like aminotransferase. The ytfP gene is located near several potentially related genes: predicted outer membrane protein and surface antigen; glycogen synthase; methionine sulfoxide reductase A; quinolinate synthase; ...
308
Structural annotation of Mycobacterium tuberculosis proteome
... a structural annotation for the genome, using computational ...methods. Structural models were obtained and validated for ,2877 ORFs, covering ,70% of the ...genome. Functional ...
14
Functional Annotation of the Bovine and Porcine Genomes
... initio and homology based methods. Ab initio gene prediction methods use Hidden Markov Models and an a priori model of gene structural components such as codon usage, transcription initiation, and polyA signals ...
95
Functional annotation of selected streptococcus pneumoniae hypothetical proteins
... physicochemical, functional and structural categorization using an integrated bioinformatics approach by means of amino acid sequence and structure- based ...
5
A clustering method for robust and reliable large scale functional and structural protein sequence annotation
... entire functional repertoire under all conditions (such as temperature, pH or the presence of interacting ...available functional annotations are error prone because of experiment interpretation or curation ...
74
Toward a standard in structural genome annotation for prokaryotes
... “ short ” gene error rate in itself is not an unbiased measurement of a gene finder ’ s ability to choose correct gene start sites. However, considering that “ short ” gene errors prevent identification of functionally ...
9
Collaborative Annotation and Visualization of Functional and Discourse Structures
... Linguistic annotation is the process of adding additional notations to raw linguistic data for descriptive or analytical ...multi-layered functional and discourse structures is crucial for both speeding up ...
9
Structural and functional analysis of muskelin.
... and consequently a truncated open reading frame. Thus, the XP_054631 and NP_067646 entries appeared to be derived from the same gene and only NP 067646 (#11) was included in the analysis. The entry XP 209285 (#13) ...
278
In Silico Sequence and Structural Annotation of Putative amidase in Mycobacterium tuberculosis
... of functional domain in Putative Amidase from Pfam database: The functional domain of Putative Amidase was predicted by Pfam database which shows single domain Amidase which is shown in ...
6
Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies
... Special challenges, however, exist for functional prediction in different classes of proteins. For example, the function of an enzyme often cannot be correctly predicted because there are no clear links from the ...
19
Detecting Errors in Discontinuous Structural Annotation
... syntactic annotation, a variation nu- cleus is defined as a contiguous string with a sin- gle label; this allows the variation n-gram method to be broken down into separate runs, one for each constituent size in ...
8
Structural Metadata Annotation for Czech: An Overview
... different structural/syntactic events ...all structural information contained in spontaneous ...precise annotation of disfluencies and other structural phenomena is ...special annotation ...
24