Systems biology approach using root phenotyping and
Hyperspectral imaging: a novel approach for plant root phenotyping
... physico-chemical root/soil con- ...deep root pheno- typing technologies. Phenotyping requires a high degree of automation in image ...for root segmentation and chemometric analysis are ...
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Rapid phenotyping of crop root systems in undisturbed field soils using X-ray computed tomography
... no root voxels but, where possible, all mineral voxels were ...to root voxels, which would hin- der root segmentation significantly ...rial using the ‘Define material by example ...States) ...
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High-throughput maize root phenotyping
... on Root System Complexity in Maize (Zea mays ...the root system to match plant ...transport systems and enzymes by various regulatory ...the root level, root morphology should have an ...
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Root phenotyping pipeline for cereal plants
... plant root phenotyping, there is still a gap between the complex, multifunctional commercial platforms which have been developed for high throughput and precision screening and the simpler root ...
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Integrative analysis of Multiple Sclerosis using a systems biology approach
... This approach is called systems biology and in contrast to traditional methodologies, multiple significant molecules from numerous studies ...
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Uncovering the hidden half of plants using new advances in root phenotyping
... in root image analysis As high-throughput image capture of root systems has become mainstream and generates ever larger datasets, there is a requirement for fast and accurate software solutions to ...
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A Bayes Linear approach to systems biology.
... If we maximise the implausibility I(x) over all 30 possible plots, we obtain the plot shown in figure 10 (left panel), where again red/orange areas (with I(x) > 3) would be discarded as implausible and the blue point ...
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Systems biology of ferroptosis: A modeling approach.
... We used an ovarian cancer stem cell model to test this predic- tion, since effective treatments for ovarian cancer remain limited, and ferroptosis inducers may ultimately offer a therapeutic option in this disease. The ...
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Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach
... axile root growth in upland ...and root traits 836 in barley (Hordeum vulgare ...of root system ...2015. Phenotyping pipeline reveals 842 major seedling root growth QTL in hexaploid ...
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Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach
... these systems biol- ogy interactions should permit a better understanding of disease variability among patients and help towards a more personalized mode of medical ...
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Analysis of root growth from a phenotyping data set using a density based model
... density approach: A common approach to determine root densities consists of counting the number or length of roots falling in each cell of a spatial grid (Scott and Sain, ...derived using ...
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A systems-biology approach to understanding the ciliopathy disorders
... NGS approaches are greatly broadening the sophisti ca- tion and types of today’s experiments in the ciliopathy field, as is occurring in other fields, using genome-wide approaches. By targeting human families with ...
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Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology
... Plant root is an organ composed of multiple cell types with different ...of root biology because -omics studies performed at the level of the entire root reflect the average responses of all ...
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Variations in root system architecture and root growth dynamics of Brassica rapa genotypes using a new scanner-based phenotyping system
... Scanner-based root phenotyping and density-based model Models are useful in synthesising knowledge to produce more global representations of the complexity of root systems and for testing ...
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Characterization of p38 MAPK Isoforms for Drug Resistance Study Using Systems Biology Approach
... validated via Western blotting. Based on the predicted results we then screened drug combinations and found the promising drug combination to reduce the effects of drug resistance. We compared the proposed MGF algorithm ...
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Computational analysis of the interferon alpha signalling pathway using a systems biology modelling approach
... - Systems Biology 11 S YSTEMS B IOLOGY As understanding of biological processes grows it is often surprising to witness the degree of complexity that is ...2002a). Systems biology is focussing ...
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Demystifying roots: a need for clarification and extended concepts in root phenotyping
... complex root systems by studying phenes at macro and micro scale, the need to integrate biology and computational methodologies is increasingly apparent ...
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Moving Towards Predictive Toxicology - A Systems Biology Approach
... di ff erent dyes and is then represented in the form of a ratio. The transformation is also applied here, however ratios are much noisier when the denominator is approaching zero. Following the transformation a ...
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An integrative and systems biology approach to Drosophila melanogaster transcriptomes
... studies using cell culture systems and Xenopus levis oocytes failed to single out bestrophins as CaCCs, because of the native interfering currents of these ...
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Pathways, Networks and Therapy: A Boolean Approach to Systems Biology
... of systems biology evolved in an attempt to introduce mathematical systems theory principles in ...those using precise mathematical rules is not easy, primarily due to the complexity and ...
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