trna gene
Convergent evolution of tRNA gene targeting preferences in compact genomes
... of tRNA genes (Table ...targeted tRNA gene, which represents an as-yet unobserved inte- gration specificity, whereas Pp_NLTR-B was found at similar positions as TRE5 elements ~50 bp upstream of ...
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Evaluation of tRNA Gene PCR for Identification of Mollicutes
... (amplified tRNA gene-intergenic spacers) present in all sample files of a particular ...distinct, tRNA gene PCR patterns, the algorithm allows us to take absent peaks into account by adding a ...
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Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes
... of tRNA gene cluster- ing, the involvement of the protein complex condensin was ...as tRNA genes might not be detected at the resolution used in the earlier microarray ...at tRNA genes, ...
11
Prediction and verification of mouse tRNA gene families
... two tRNA scanning programs, the commonly used tRNAscan-SE and more recently developed ARAGORN, to predict the probable tRNA genes in the mouse ...definitive tRNA gene identification program. ...
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tRNA Gene Sequences Are Required for Transcriptional Silencing in Entamoeba histolytica
... EY tRNA array has also been shown to have properties of autonomous replication sequences, at least when transferred to ...that tRNA arrays are located at the end of the amoeba chromosomes, presumably at the ...
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Sequencing of the complete mitochondrial genome of a fish parasitic flatworm Paratetraonchoides inermis (Platyhelminthes: Monogenea): tRNA gene arrangement reshuffling and implications for phylogeny
... three tRNA-like sequences found in the mNCR, and a unique gene ...that gene order within monopisthocotylids may be evolving at uneven rates, thus creating misleading evolutionary ...single ...
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The Klebsiella pheV tRNA locus: a hotspot for integration of alien genomic islands
... Genome plasticity is of major importance in bacterial evol- ution and has frequently been associated with intraspecies phenotype variation. 4 This paper has provided strong evi- dence that the Klebsiella pheV tRNA ...
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Variation in the Spacer Regions Separating tRNA Genes in Renibacterium salmoninarum Distinguishes Recent Clinical Isolates from the Same Location
... the tRNA intergenic spacer regions (tDNA-ILPs) was ...salmoninarum tRNA genes and tRNA intergenic spacer regions that had been generated by using consensus tRNA gene ...plete ...
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Mouse Mammary Tumor Virus Carrying a Bacterial supFGene Has Wild-Type Pathogenicity and Enables Rapid Isolation of Proviral Integration Sites
... Insertional mutagenesis studies of MMTV have been ham- pered in the past by the difficulty in cloning the gag portion of MMTV proviruses into plasmids and lambda vectors (3). This is problematic during the cloning of ...
6
Solving the riddle of codon usage preferences: a test for translational selection
... data. tRNA gene numbers and genome size are highly correlated, so ample areas of ‘genomic landscape’ do not present data points, there- fore, the predictions of the model in the upper left, and lower right ...
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Ty element-induced temperature-sensitive mutations of Saccharomyces cerevisiae.
... Gene disruption experiments revealed that the Sscl- phenotype was caused by the deletion of the AGG arginine tRNA gene (the HSXl gene) alone, which is located upst[r] ...
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THE INABILITY OF YEAST TRANSFER RNA TO SUPPRESS AN AMBER MUTATION IN AN E. coli SYSTEM
... If the yeast amber suppressor is the result of a n altered anticodon and, if, as outlined above, each yeast tyrosine tRNA gene is equally expressed, we would expect to se[r] ...
6
A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.
... The I-rRNA gene has no directly adjacent tRNA gene to define its 3' end and, therefore, its approximate 3' end was designated as the average position of the end of[r] ...
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Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3.
... events that occurred at these positions. Plasmid pEH2hlSV was used to determine the per- centage of transposition events that occur within the divergent tRNA gene tar[r] ...
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Intergenic Transcriptional Interference Is Blocked by RNA Polymerase III Transcription Factor TFIIIB in Saccharomyces cerevisiae
... the tRNA gene upstream of the Saccharomyces cerevisiae ATG31 gene protects the ATG31 promoter against readthrough transcriptional interference from the upstream noncoding intergenic SUT467 ...
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The Mitochondrial Genome of the Hemichordate Balanoglossus carnosus and the Evolution of Deuterostome Mitochondria
... with ClustalW (version 1.7, Thompson et al. 1994) using de- ( Sprinzl et al. 1989) and that is added post-transcrip- fault parameters. The ND6 subunit of NADH dehydrogenase tionally in other metazoans ( L’Abbe et al. ...
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Multiplex PCR Assay for Differentiation of Helicobacter felis, H bizzozeronii, and H salomonis
... Helicobacter felis, Helicobacter bizzozeronii, and Helicobacter salomonis are frequently found in the gastric mucous membrane of dogs and cats. These large spiral organisms are phylogenetically highly related to each ...
8
Transcription of Leishmania major U2 small nuclear RNA gene is directed by extragenic sequences located within a tRNA like and a tRNA Ala gene
... Around 1 μg of DNase I-treated RNA from transiently transfected cells (from three independent transfections) was used as template for first strand cDNA synthesis using SuperScript™ III Reverse Transcriptase (Invitrogen) ...
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A Unified Model of Codon Reassignment in Alternative Genetic Codes
... than the values we are using in these simulations. This ing ambiguous translation, both the tRNAs in question means that this effect could well be significant in ge- have anticodons that can “correctly” pair with the ...
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Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon Altered tRNA Pools
... of gene segments be- tween human and avian influenza ...virus gene seg- ments need to adapt to ...PB1 gene of the 1968 H3N2 pan- demic ...of tRNA pools explains the re- duced inhibition of ...
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