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[PDF] Top 20 Rare variant analysis of blood pressure phenotypes in the Genetic Analysis Workshop 18 whole genome sequencing data using sequence kernel association test

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Rare variant analysis of blood pressure phenotypes in the Genetic Analysis Workshop 18 whole genome sequencing data using sequence kernel association test

Rare variant analysis of blood pressure phenotypes in the Genetic Analysis Workshop 18 whole genome sequencing data using sequence kernel association test

... 60x sequencing depth, with a goal of finding novel ...these rare variant approaches because available annota- tion information does not contain these novel ...GAW18 data, they may be shared ... See full document

6

Comparison of multilevel modeling and the family based association test for identifying genetic variants associated with systolic and diastolic blood pressure using Genetic Analysis Workshop 18 simulated data

Comparison of multilevel modeling and the family based association test for identifying genetic variants associated with systolic and diastolic blood pressure using Genetic Analysis Workshop 18 simulated data

... empirical data exhibit a hierarchical ...family-based genetic association studies ...model analysis in family-based genetic association studies, especially for longitudinal ... See full document

7

A goodness of fit association test for whole genome sequencing data

A goodness of fit association test for whole genome sequencing data

... sparse genetic effects through regression model ...the test to whole genome sequencing (WGS) data by using the Genetic Analysis Workshop 18 ... See full document

6

Analysis of homozygosity disequilibrium using whole genome sequencing data

Analysis of homozygosity disequilibrium using whole genome sequencing data

... and genome-wide association genotype data for 495 ...Diabetes Genetic Exploration by Next-generation sequencing in Ethnic Samples) Project ...about blood pressures (DBP and SBP) ... See full document

5

Evaluation of gene based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data

Evaluation of gene based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data

... of blood pressure into just two groups masks the effect of the genes. Our results also confirmed that Fisher ’ s sta- tistic is not only robust but can also improve power over individual pooled linear and ... See full document

6

Gene based analysis of rare and common variants to determine association with blood pressure

Gene based analysis of rare and common variants to determine association with blood pressure

... the Genetic Determinants of Chronic Diseases, Department of Clinical Epidemiology and Biostatistics, McMaster ...GAW18 whole genome sequence data were provided by the T2D-GENES ... See full document

5

Pathway based analysis of rare and common variants to test for association with blood pressure

Pathway based analysis of rare and common variants to test for association with blood pressure

... the Genetic Determinants of Chronic Diseases, Department of Clinical Epide- miology and Biostatistics, McMaster ...GAW18 whole genome sequence data were provided by the T2D-GENES ... See full document

5

A multi level model for analyzing whole genome sequencing family data with longitudinal traits

A multi level model for analyzing whole genome sequencing family data with longitudinal traits

... next-generation whole genome sequencing (WGS) studies have the strength to provide greater information for the identification of rare variants, which likely account for a significant portion ... See full document

5

Joint analysis of multiple blood pressure phenotypes in GAW19 data by using a multivariate rare variant association test

Joint analysis of multiple blood pressure phenotypes in GAW19 data by using a multivariate rare variant association test

... the Genetic Analysis Workshop 19 (GAW19) data [1], both systolic and diastolic blood pressures are available for each ...common genetic architecture either through pleiotropy—one ... See full document

5

Gaussian graphical models for phenotypes using pedigree data and exploratory analysis using networks with genetic and nongenetic factors based on Genetic Analysis Workshop 18 data

Gaussian graphical models for phenotypes using pedigree data and exploratory analysis using networks with genetic and nongenetic factors based on Genetic Analysis Workshop 18 data

... hypertension, blood pressure medication use, and smoking status was derived for three time points using real ...exploratory analysis of the ...graph using 20 causal variants, 21 ... See full document

5

Powerful association test combining rare variant and gene expression using family data from Genetic Analysis Workshop 19

Powerful association test combining rare variant and gene expression using family data from Genetic Analysis Workshop 19

... and blood pressure data available in the GAW19 family data ...Our analysis focuses on systolic blood pressure (SBP) and diastolic blood pressure (DBP) as ... See full document

5

An exploration of heterogeneity in genetic analysis of complex pedigrees: linkage and association using whole genome sequencing data in the MAP4 region

An exploration of heterogeneity in genetic analysis of complex pedigrees: linkage and association using whole genome sequencing data in the MAP4 region

... In analysis of the original Genetic Analysis Workshop pedigree data (reported in detail in Chen et al [3]), we observed substantial between-pedigree heterogeneity and differences ... See full document

6

Extended T2 tests for longitudinal family data in whole genome sequencing studies

Extended T2 tests for longitudinal family data in whole genome sequencing studies

... Family data and rare variants are two key features of whole genome sequencing analysis for hunting the missing heritability of common human ...combine rare variant ... See full document

6

Higher criticism approach to detect rare variants using whole genome sequencing data

Higher criticism approach to detect rare variants using whole genome sequencing data

... for whole genome sequencing (WGS) data, the association test for variant groups is a key approach for genetic ...weak genetic effects to be detected, the ... See full document

6

Rare genetic variant analysis on blood pressure in related samples

Rare genetic variant analysis on blood pressure in related samples

... The genetic variants associated with blood pressure identified so far explain only a small proportion of the total heritability of this ...in sequencing technology and statistical methodology, ... See full document

5

Whole genome sequence analysis of the simulated systolic blood pressure in Genetic Analysis Workshop 18 family data: long term average and collapsing methods

Whole genome sequence analysis of the simulated systolic blood pressure in Genetic Analysis Workshop 18 family data: long term average and collapsing methods

... family-based data, we extended the proportion test of Morris and Zeggini [6] to account for family struc- ...multiple rare variants in a genomic region, Morris and Zeggini [6] developed the ... See full document

5

Data for Genetic Analysis Workshop 18: human whole genome sequence, blood pressure, and simulated phenotypes in extended pedigrees

Data for Genetic Analysis Workshop 18: human whole genome sequence, blood pressure, and simulated phenotypes in extended pedigrees

... the data were prepared, we anticipated that GAW18 participants could use them to address a variety of timely problems and issues in statistical genetics meth- ods ...GWAS data would be used to improve ... See full document

9

Genetic Analysis Workshop 18 single nucleotide variant prioritization based on protein impact, sequence conservation, and gene annotation

Genetic Analysis Workshop 18 single nucleotide variant prioritization based on protein impact, sequence conservation, and gene annotation

... of rare variant association ...of Genetic Analysis Workshop 18 (GAW18) single-nucleotide variants; we focused on variants detected by whole genome ... See full document

6

Dynamic pathway analysis of genes associated with blood pressure using whole genome sequence data

Dynamic pathway analysis of genes associated with blood pressure using whole genome sequence data

... between rare and common genetic variants and the simulated quanti- tative trait (SBP) measured at 3 time points at the gene and pathway ...and rare variants, or the average effect between rare ... See full document

5

Genome analysis and knowledge-driven variant interpretation with TGex

Genome analysis and knowledge-driven variant interpretation with TGex

... recommended analysis workflow is the interpretation and examination of potential candi- date ...phenotype association, hence the default sorting of the candidate variants to review is their VarElect ... See full document

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