[PDF] Top 20 A comparative analysis of family based and population based association tests using whole genome sequence data
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A comparative analysis of family based and population based association tests using whole genome sequence data
... A whole genome scan was performed using FBAT-l for both family and population-based methods after adjusting for first 10 principal components generated by EIGEN- STRAT ...(UCSC) ... See full document
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Rare variant analysis of blood pressure phenotypes in the Genetic Analysis Workshop 18 whole genome sequencing data using sequence kernel association test
... nonburden tests for a gene, it is necessary to know which SNPs are contained in the ...constructed based on the 1000 Genomes Pro- ...were based on GAW18 data, they may be shared with other ... See full document
6
Comparing the power of family based association tests for sequence data with applications in the GAW18 simulated data
... 2 tests was conducted separately by including rare variants only, common variants only, and all variants of each ...12 tests were conducted at each ...of tests. To adjust for that proportion, we ... See full document
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Genome wide association tests by using block information in family data
... article, based on two coding schemes, we extend the general score test statistic proposed by Schaid [4] for case-parents from one child, to include multiple ...the association between a disease locus and ... See full document
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Association analysis of whole genome sequencing data accounting for longitudinal and family designs
... the association between common SNPs and SBP. All 6 tests produced proper type I error because their genomic control parameter λ s are close to ...the data are well described by our models and ... See full document
7
Incorporating ENCODE information into association analysis of whole genome sequencing data
... variants based on PolyPhen2 [6], in association analysis of WES data ...hand, genome- wide functional studies, such as the Encyclopedia of DNA Elements (ENCODE) project [10], have ... See full document
5
Extended T2 tests for longitudinal family data in whole genome sequencing studies
... Family data and rare variants are two key features of whole genome sequencing analysis for hunting the missing heritability of common human ...2 tests that combine rare variant ... See full document
6
Exploration and comparison of methods for combining population and family based genetic association using the Genetic Analysis Workshop 17 mini exome
... for population stratifi- cation and to aggregate families and case-control samples by means of a linear regression ...the data and incorporated into the variance of the test ...on genome-wide ... See full document
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Variance components for bovine tuberculosis infection and multi breed genome wide association analysis using imputed whole genome sequence data
... contaminated swards, compared to any sward contaminated by other species. Notably, badgers (Meles meles) are deemed to be the primary wildlife reservoir of bTB in the Republic of Ireland [48] and they are known to ... See full document
24
The Genetic Overlap Between Hair and Eye Color
... by Genome-Wide Association Study (GWAS) in a Dutch Caucasian family-based population sample and examined the genetic correlation between hair and eye color using data from ... See full document
5
Distance based phenotypic association analysis of DNA sequence data
... human population, but the sparseness of these alleles in samples becomes an impor- tant obstacle to detecting the true effects of rare variants under a single-variant-based ...statistical tests, ... See full document
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Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015
... employed whole-genome sequence (WGS)-based characteriza- tion of 1,454 invasive GAS isolates recovered in 2015 by Active Bacterial Core Sur- veillance and performed conventional antimicrobial ... See full document
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Dynamic pathway analysis of genes associated with blood pressure using whole genome sequence data
... Genetic Analysis Workshop 18 (GAW18) organizers were polymorphic based on all individuals, but they may be not polymorphic in the unrelated individuals analyzed in this ...unrelated data, which may ... See full document
5
<p>Whole-genome sequence analysis of multidrug-resistant uropathogenic strains of <em>Escherichia coli</em> from Mexico</p>
... The genome assemblies were uploaded to SeroTypeFinder ...MultiLocus Sequence Typing (MLST) with the online tool MLST ...the sequence type (ST) for each of the 24 assembled ... See full document
15
Comparative whole genome sequence analysis of wild type and cidofovir resistant monkeypoxvirus
... Poxviruses exert exquisite control over the timing of gene expression to regulate genome replication and virion assembly [19]. Five early proteins are essential for poxvi- rus DNA replication, including the DNA ... See full document
15
Whole genome sequence analysis of Mycobacterium suricattae
... Dippenaar, A, Parsons, S D C, Sampson, S L, van der Merwe, R G, Drewe, J A, Abdallah, A M, Siame, K K, van Pittius, N C G, van Helden, P D, Pain, A and Warren, R M (2015) Whole genome sequence ... See full document
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Pan PCR, a Computational Method for Designing Bacterium Typing Assays Based on Whole Genome Sequence Data
... average. From these 29 genomic sequences, the total set of 108,663 genes was first clustered by sequence identity into 9,012 gene clus- ters. This set of gene clusters was further reduced to 4,376 by removing gene ... See full document
7
Using next generation DNA sequence data for genetic association tests based on allele counts with and without consideration of zero inflation
... expression based on RNA sequence data (see, eg, the R-package DESeq2), but the analysis of DNA sequence data almost always fo- cuses on called ...proposed using the ... See full document
8
Whole Genome Analysis in Korean Patients with Autoimmune Myasthenia Gravis
... study using the same Axiom Genome-Wide ASI 1 Array in an additional sample set of equal or greater size drawn from the Korean ...Joint analysis of these data sets will significantly increase ... See full document
9
Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB)
... The genome of Methanoculleus bourgensis strain MAB1 was sequenced at the SciLifeLab Uppsala, Sweden using Ion Torrent PM systems with a mean length of 206 bp, a longest read length 392 bp and a total of ... See full document
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