[PDF] Top 20 Comparison of Variable Number Tandem Repeat and IS6110 Restriction Fragment Length Polymorphism Analyses for Discrimination of High and Low Copy Number IS6110 Mycobacterium tuberculosis Isolates
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Comparison of Variable Number Tandem Repeat and IS6110 Restriction Fragment Length Polymorphism Analyses for Discrimination of High and Low Copy Number IS6110 Mycobacterium tuberculosis Isolates
... M. tuberculosis has not been determined to date. M. tuberculosis H37 was isolated in 1905, and the two variants H37Rv and H37Ra were identi- fied during the ...different IS6110- RFLP profiles but ... See full document
5
Evaluation of the Epidemiological Relevance of Variable Number Tandem Repeat Genotyping of Mycobacterium bovis and Comparison of the Method with IS6110 Restriction Fragment Length Polymorphism Analysis and Spoligotyping
... 67 isolates in a Chadian setting ...lated isolates within well-identified clonal lineages were virtu- ally all confined to these loci, indicating a generally higher evolutionary rate compared to the other ... See full document
13
Evaluation of Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Analysis and Spoligotyping for Genotyping of Mycobacterium bovis Isolates and a Comparison with Restriction Fragment Length Polymorphism Typing
... the Mycobacterium tuberculosis complex ge- nome, described as mycobacterial interspersed repetitive units, may show polymorphism of the number of tandem ...M. tuberculosis ... See full document
5
Comparison of a Variable Number Tandem Repeat (VNTR) Method for Typing Mycobacterium avium with Mycobacterial Interspersed Repetitive Unit VNTR and IS1245 Restriction Fragment Length Polymorphism Typing
... stantial number of IS1245 sequences, as is the case with the Mycobacterium tuberculosis complex ...contrast, variable- number tandem-repeat (VNTR) typing analysis using ... See full document
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Use of Variable Number Tandem Repeat Typing To Differentiate Mycobacterium tuberculosis Beijing Family Isolates from Hong Kong and Comparison with IS6110 Restriction Fragment Length Polymorphism Typing and Spoligotyping
... of isolates containing one copy of IS6110) of the three RFLP- defined clusters were split up by VNTR ...three IS6110 bands, but clustered by VNTR, may nevertheless correspond to ... See full document
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Comparison of a Semiautomated Commercial Repetitive Sequence Based PCR Method with Spoligotyping, 24 Locus Mycobacterial Interspersed Repetitive Unit–Variable Number Tandem Repeat Typing, and Restriction Fragment Length Polymorphism Based Analysis of IS6110 for Mycobacterium tuberculosis Typing
... M. tuberculosis stricto sensu clinical isolates and the H37Rv reference strain (French National Reference Center for Mycobacteria) were ...MDR isolates previ- ously characterized by spoligotyping, ... See full document
5
Clustering of Beijing genotype Mycobacterium tuberculosis isolates from the Mekong delta in Vietnam on the basis of variable number of tandem repeat versus restriction fragment length polymorphism typing
... (0.994). However, the differences observed were small. The HGDI of some loci (VNTR 154, VNTR 2461,VNTR 3171) were low in our study, which means that these loci are less useful in discriminating Beijing strains in ... See full document
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Molecular Typing of Mycobacterium tuberculosis by Using Nine Novel Variable Number Tandem Repeats across the Beijing Family and Low Copy Number IS6110 Isolates
... clinical isolates of M. tuberculosis has the potential to significantly impact both clinical practice and pub- lic ...M. tuberculosis genotyping method, IS6110 re- striction fragment ... See full document
7
Discordance between Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing and IS6110 Restriction Fragment Length Polymorphism Genotyping for Analysis of Mycobacterium tuberculosis Beijing Strains in a Setting of High Incidence of Tuberculosis
... M. tuberculosis (27). However, studies comparing IS6110 RFLP molecular epidemiological and contact tracing data have questioned the validity of the definition of transmission (4, ...of IS6110 RFLP in ... See full document
8
Comparative Study of IS6110 Restriction Fragment Length Polymorphism and Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5 Year Nationwide Survey
... a comparison between only IS6110 RFLP and VNTR typing, because additional PGRS RFLP typing was used for strains with ⱕ5 copies of IS6110 (n ⫽ ...versus IS6110 RFLP typing. Importantly, cases ... See full document
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Mycobacterial Interspersed Repetitive Unit Typing of Mycobacterium tuberculosis Compared to IS6110 Based Restriction Fragment Length Polymorphism Analysis for Investigation of Apparently Clustered Cases of Tuberculosis
... of isolates identified by IS6110-based RFLP; the pair not identified by MIRU were isolates from a husband and wife and were separated by 3 years, suggesting a higher rate of evolution at loci 16 and ... See full document
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Polymorphism of Variable Number Tandem Repeats at Multiple Loci in Mycobacterium tuberculosis
... the isolates containing the deletion in the allele of VNTR4052 was relatively low and had no correlation with IS6110 patterns, suggesting that deletion in this region ...2. Comparison of the ... See full document
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Genetic Diversity of Mycobacterium africanum Clinical Isolates Based on IS6110 Restriction Fragment Length Polymorphism Analysis, Spoligotyping, and Variable Number of Tandem DNA Repeats
... clinical isolates originally identified as Mycobacterium africanum were characterized using both phenotypic and genotyping ...M. tuberculosis complex, whereas genotypic characterization was based on ... See full document
9
Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Isolates with Low Copy Numbers of IS6110 by Using Mycobacterial Interspersed Repetitive Units
... of Mycobacterium tuberculosis isolates is useful for determining the extent of recent transmission in a community and the potential risk factors for recent transmis- sion, for identifying previously ... See full document
11
Evaluation of Semiautomated IS6110 Based Restriction Fragment Length Polymorphism Typing for Mycobacterium tuberculosis in a High Burden Setting
... clinical isolates of Mycobacterium tuberculosis has improved our understanding of the epidemiology and patterns of transmission of tuberculosis (TB) (1, ...(IS6110)-based ... See full document
6
Genetic Diversity of Mycobacterium tuberculosis Isolates from a Tertiary Care Tuberculosis Hospital in South Korea
... clinical isolates of M. tuberculosis from the National Masan Tuberculosis Hospital by spoligotyping, IS6110 restriction fragment length polymorphism (RFLP), and 24- ... See full document
8
Evolution of the IS6110 Based Restriction Fragment Length Polymorphism Pattern during the Transmission of Mycobacterium tuberculosis
... All isolates were classified accord- ing to the internationally standardized DNA fingerprinting protocol by using the IS-3⬘ probe (18, ...representing IS6110-mediated evolutionary events ...additional ... See full document
6
Comparative Evaluation of Ligation Mediated PCR and Spoligotyping as Screening Methods for Genotyping ofMycobacterium tuberculosis Strains
... of Mycobacterium tuberculosis strains. Relying on restriction fragment length polymorphism (RFLP) analysis with IS6110 (IS6110 RFLP analysis) as a “gold standard,” ... See full document
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Epidemiologic Import of Tuberculosis Cases Whose Isolates Have Similar but Not Identical IS6110 Restriction Fragment Length Polymorphism Patterns
... of Mycobacterium tuberculosis from patients with epidemiologic links frequently demonstrate iden- tical IS6110 restriction fragment length polymorphism (RFLP) patterns ... See full document
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Comparison of Variable-Number Tandem-Repeat Markers typing and IS1245 Restriction Fragment Length Polymorphism fingerprinting of Mycobacterium avium subsp. hominissuis from human and porcine origins
... real number of mycobacteriosis in slaughter pigs is unknown and mycobacteria contaminated pork may pass the slaughter line for human consumption or some carcasses may be rejected in ... See full document
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