[PDF] Top 20 The complete genome sequence and analysis of a plasmid-bearing myxobacterial strain Myxococcus fulvus 124B02 (M 206081)

... blast-all analysis using BLASTP program with an E-value cutoff of 1e-5, and the results were transferred into OrthoMCL package to extract the paralogous and ortho- logous ...phylogenomic analysis indicated ... See full document

... Laboratory genome annotation pipeline, followed by a round of manual curation using the ...prediction analysis and functional annotation was performed within the Integrated Microbial ... See full document

... bourgensis strain MAB1 has been identi- fied as a syntrophic partner for acetate-oxidising bacteria in biogas processes operating with high ammonia ...Initial genome surveillance indicates an adaption of ... See full document

... Laboratory genome an- notation pipeline, followed by a round of manual curation using the JGI GenePRIMP pipeline ...prediction analysis and functional annotation was performed within the Integrated ... See full document

... NB10 genome is around 255,000 bp larger than the genomes of strains 775 and ...comparative analysis using BRIG was performed to identify CDSs unique to ...provide strain NB10 an advantage either in ... See full document

... Laboratory genome an- notation pipeline, followed by a round of manual curation using the JGI GenePRIMP pipeline ...prediction analysis and functional annotation was performed within the Integrated ... See full document

... FB24 at the DOE-Joint Genome Institution (DOE- JGI). Medium (8 kb) and small (3 kb) insert random libraries were partially sequenced with average success rate of 88% and average high-quality read lengths of 614 ... See full document

... The genome sequence of ...Phylogenetic analysis of methanogenesis and cofactor biosynthesis enzymes suggest that Methanomicrobiales form a group distinct from other methanogens, and therefore ... See full document

... prediction analysis and functional annotation was performed within the Integrated Microbial Genomes – Expert Review (IMG-­‐ER) platform developed by the Joint Genome Institute, Walnut Creek, CA, USA ... See full document

... a sequence specific manner [24, ...sp. strain RQ7, whereas JGI-IMG’s MGAP pipeline and a manual analysis using CRISPRFinder [30] recognized a total of 8 loci (Table ... See full document

... genic strain isolated from a healthy dog on February 1, 2009, in the city of Belo Horizonte (state of Minas Gerais, Brazil), was selected for sequencing because it prevented PDI in hamster model [22], similar to ... See full document

... Laboratory genome annotation pipeline, followed by a round of manual curation using the JG ...prediction analysis and functional annotation was performed within the ... See full document

... Methanomicrobiales. The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura-Nei model [43]. The tree with the highest log likelihood ( − 3033.8513) is shown. Initial tree(s) for ... See full document

... tion using JGI’ dicted CDSs were translated and used to search the National Center for Biotechnology Information (NCBI) non-redundant database, UniProt, TIGR- Fam, Pfam, PRIAM, KEGG, COG, and InterPro data- bases. The ... See full document

... rational strain development is the genetic accessibility of the pro- spective ...the complete genome sequence of ...of plasmid-tagging approaches via a counter-selectable marker [49] to ... See full document

... ide dehydrogenase (CODH) pathway [ 30 ] and all necessary genes required for this pathway have been annotated in the finished genome sequence. Interestingly, a core set of genes that is specific for this ... See full document

... of the family Desulfomicrobiaceae, inferred from 1,457 aligned characters [22, 23] of the 16S rRNA gene sequence under the maximum likelihood criterion [24]. The tree was rooted with all members from the ... See full document

... gene sequence under the maximum likelihood criterion [23] and rooted with the type strains of the neighboring genus ...type strain genome sequencing projects registered in GOLD [24] are shown in ... See full document

... The second osmotic solute in D. retbaense appears to be glycine betaine, which can be accumulated in two different ways: The most efficient way in terms of energy represents the uptake from the environment. Glycine ... See full document

... nospora inferred from 1,474 aligned characters [ 19,20 ] of the 16S rRNA gene under the maximum likelihood criterion [ 21 ]. The tree was rooted with all type strains of the members of the genus Prauserella, another ... See full document