[PDF] Top 20 Complete genome sequence of Cryptobacterium curtum type strain (12-3T)

... Genes were identified using GeneMark [ 19 ] as part of the genome annotation pipeline in th system [ 20 ], followed by a round of manual cura- tion using the JGI GenePRIMP pipeline [ 21 ]. The predicted CDSs were ... See full document

... coccaceae, inferred from 1,456 aligned 16S rRNA characters [12] under the maximum likelihood criterion [13, 14]. The tree was rooted with four members of the neighboring family Intrasporangia- ceae. The branches ... See full document

... tion of polluted soils and water [6,7]. Other spe- cies were isolated from industrial waste water [8], activated sludge foam [9], automobile tire [10], mangrove rhizosphere [11], tar-contaminated oil [12], soil ... See full document

... Evidence codes - IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly ... See full document

... The metabolic Pathway/Genome Database (PGDB) was computationally generated using Pathway Tools software version 12.5 [ 28 ] and MetaCyc ver- sion 12.5 [ 29 ], based on annotated EC numbers and a customized enzyme ... See full document

... for sequence assembly and quality ...finished sequence. The completed genome se- quences of ...12.9 sequence coverage per base, with an error rate less than 1 in ...100,000. Genome ... See full document

... Members of the species D. fermentans were regu- larly found in cysts of the soybean nematode Hete- rodera glycines [ 12 ]. D. fermentans was also iso- lated from contaminated soil as a result of its abili- ty to ... See full document

... Eastern China [10], Northern Taiwan [11] and Iceland [12]. Interestingly, the genus Meiothermus is heterogeneous with respect to pigmentation. The yellow pigmented species also form a distinct group on the basis ... See full document

... the type strains of the other genera within the order ...gene sequence under the maximum likelihood criterion [10] and rooted in accordance with current taxonomy ...with type strain ... See full document

... Methanomicrobiales. The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura-Nei model [43]. The tree with the highest log likelihood ( − 3033.8513) is shown. Initial tree(s) for ... See full document

... The genome was sequenced using a combination of Sanger and 454 sequencing platforms. All gen- eral aspects of library construction and sequenc- ing can be found at th ing reads were assembled using the Newbler as- ... See full document

... Transporters for carboxylate are also noticeable. For example, the tripartite ATP-independent pe- riplasmic transporter (TRAP-T) family (TC# 2.A.56) is involved in the uptake of widely diver- gent compounds, mostly ... See full document

... related type strain is F. placidus [4] with 96.5% sequence identity, while the other type strains of the genus Archaeoglobus share ...rRNA sequence of A. pro- fundus , 73 sequences of ... See full document

... the type species of the new ge- nus Thermobispora ...to sequence U83909 the closest related type strain (9% sequence difference [10]) is Micromonospo- ra pattaloongensis [11] of the ... See full document

... other type strains of the other genera within the family ...gene sequence under the maximum likelihood criterion [10] and rooted in accordance with the current ...with type strain ... See full document

... nary sediments in Japan [10], sediment (FN423884), rhizosphere [11], acidic Sphagnum peat bog [12], fleece rot (DQ221822), and salmonid gill [13]. Con- exibacter related strains may also act as opportu- nistic ... See full document

... P. heparinus cells are Gram-negative, non- flagellated, non-spore-forming, flexible rods with rounded or slightly tapered ends. Cell width is 0.4- 0.5 µm and cell length can vary from 0.7 to 6 µm. Protrusions can be ... See full document

... the type strains of the other genera within the family ...gene sequence under the maximum likelihood criterion [31] and rooted in accordance with the current ...with type strain genome ... See full document

... ongoing genome sequencing projects that have led to a publication in the scientific ...list complete, there is no guarantee that we may have omitted one or more publications appearing in this time ... See full document

... baculatum strain 9974 (DSM 1743) is also able to use ethanol as a substrate [10] and sulfur as an electron acceptor ...in strain 9974, un- like in other fresh water sulfate reducers which use protons ... See full document