[PDF] Top 20 Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1T)

... bridging PCR fragments with subcloning. Gaps between contigs were closed by editing in Con- sed, by PCR and by Bubble PCR primer walks (J.- F. Chang, unpublished). A total of 135 additional reactions were necessary to ... See full document

... Genes were identified using two gene modeling programs, Glimmer [36] and Critica [37] as part of the Oak Ridge National Laboratory genome annota- tion pipeline. The two sets of gene calls were com- bined using ... See full document

... environmental sequence was DQ424925 ('Enrichment and Ther- mophilic Mediator-Less Microbial Fuel Cell ther- mophilic microbial fuel cell enriched artificial wastewater clone 1B62') [9], which showed an identity of ... See full document

... In relation to L -lysine metabolism, it is also of in- terest that up to 14 genes encode proteins annotat- ed as lysine exporter proteins (LYSE/YGGA). This property could be related to the extracellular activi- ty of the ... See full document

... The strain was an early target for phylo- genetic studies of the domain Archaea (at that time termed ‘ Archaebacteria ’) via DNA-rRNA cross-hybridizations [4,5], as well as studies on the archaeal DNA-dependent ... See full document

... 1-2 µm length (Figure 2) [1]. Spiral cells are also observed in the exponential growth phase [1]. S. kujiense cells stain Gram-negative and non spore- forming (Table 1). The organism is described as motile with one polar ... See full document

... the type strain as shown by pyrolysis mass spec- trometry [ 8 ...94% sequence identity (16S rRNA gene), S. exigua , the type strain of the closest related species represents the only ... See full document

... the type species of the genus Cytophaga , which, in turn is the type of the family Cytophagaceae , a name that may not be replaced by the family name “ Flexibacteriaceae” as long as Cytophaga hutchinsonii ... See full document

... for sequence assembly and quality assessment in the following finishing ...finished sequence. The error rate of the completed genome sequence is less than 1 in ... See full document

... quenced at the Joint Genome Institute (JGI) using a combination of 3.5 kb, 9 kb and 37 kb DNA li- braries. All general aspects of library construc- tion and sequencing performed at the JGI can be found at the JGI ... See full document

... Cytophagaceae type strains, inferred from 1,378 aligned characters [ 2,3 ] of the 16S rRNA sequence under the maximum parsimony criterion [ 4 ...a genome sequencing project registered in GOLD [ 5 ] ... See full document

... the complete genome sequence and ...first complete genome sequence of a member of the family Actinosynnemataceae, and only the second sequence from the actinobacterial ... See full document

... all type strains of the members of the genus Prauserella, another genus in the family ...with type strain genome sequencing projects registered in GOLD [ 22 ] are shown in blue, published ... See full document

... The metabolic Pathway/Genome Database (PGDB) was computationally generated using Pathway Tools software version 12.5 [ 28 ] and MetaCyc ver- sion 12.5 [ 29 ], based on annotated EC numbers and a customized enzyme ... See full document

... The genome project is deposited in the Ge-­‐ nomes OnLine Database [ 10 ] and the complete ge-­‐ nome sequence has been deposited in ...GenBank. Sequence, `inishing and annotation were ... See full document

... the type strain of the species, and is of phylogenetic interest because of its location in the Dermacoccaceae, a poorly studied family within the actinobacterial suborder ...The strain described in ... See full document

... DQ179032 and others), and from hydrothermally modified volcanic soil at Mount Hood (EU419128). Screening of environmental genomic samples and surveys reported at the NCBI BLAST server indicated no closely related ... See full document

... the type strains of the other genera within the family ...gene sequence under the maximum likelihood criterion [31] and rooted in accordance with the current ...with type strain genome ... See full document

... the type species and genus of the family Hydrogenimonaceae in the order Campylobacte- rales , contains both spermidine and spermine as the major polyamines ... See full document

... baculatum strain 9974 (DSM 1743) is also able to use ethanol as a substrate [10] and sulfur as an electron acceptor ...in strain 9974, un- like in other fresh water sulfate reducers which use protons ... See full document