[PDF] Top 20 A computational analysis of the phylogenetic trees of some eukaryotes sequences
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A computational analysis of the phylogenetic trees of some eukaryotes sequences
... the analysis, organization, management and distribution of biological data in order to answer complex biological ...and computational biology are synonyms and describe the use of computers and ... See full document
5
Phylogenetic Analysis of Polyomavirus BK Sequences
... Phylogenetic analysis. Analysis was carried out for whole-genome sequences as well as sequences derived from agnogene, VP1, VP2, VP3, and the T-antigen ...genome. Sequences were ... See full document
12
Detection and molecular characterization of phytoplasmas infecting apple trees in Poland
... apple trees growing in six regions of Poland were tested for ...region sequences were amplified from total DNAs prepared from phloem tissue of apple ...apple trees were infected by Candidatus ... See full document
7
Molecular Epidemiology of Human Immunodeficiency Virus Type 1 Transmission in a Heterosexual Cohort of Discordant Couples in Zambia
... PCR analysis of uncultured blood samples from both partners and sequenced without interim ...reference sequences as well as local ...in phylogenetic trees in a statistically highly significant ... See full document
9
Multigene-Based Analyses of the Phylogenetic Evolution of Oligotrich Ciliates, with Consideration of the Internal Transcribed Spacer 2 Secondary Structure of Three Systematically Ambiguous Genera
... rDNA sequences have been widely used to infer evolutionary relationships among spirotrichs, and phylogenetic trees based on such data are generally concordant with many morphological hypotheses, ... See full document
9
Phylogenetic Analysis of Three Long Non-coding RNA Genes: AK082072, AK043754 and AK082467
... non-coding sequences than to the coding sequence of the ...the sequences of these genes are appropriate for phylogenetic ...vertebrates, phylogenetic analysis and natural selection ... See full document
9
Identification and Phylogenetic Relationship of the Most Common Pathogenic Candida Species Inferred from Mitochondrial Cytochrome b Gene Sequences
... acid-based phylogenetic trees. Al- though there was some difference in the degree of resolution when nucleotide and amino acid sequences were used, the topologies obtained with both sequence ... See full document
8
Coevolution of the S-Locus Genes SRK, SLG and SP11/SCR in Brassica oleracea and B. rapa
... SRK sequences, and therefore the hypothesis that the topologies of phylogenetic trees supported by these two loci were the same was not ...similar analysis using PAML (Yang ... See full document
10
Archaeal ancestors of eukaryotes: not so elusive any more
... of eukaryotes. The standard ‘tree of life’, based initially on the sequences of 16S rRNA and subsequently on the sequences of other universal genes, such as protein components of the trans- lation ... See full document
7
Ribosomal proteins expression and phylogeny in alpaca (Lama pacos) skin
... the phylogenetic trees from the DNA sequences by using parsimony or maxi- mum likelihood methods for molecular and evolu- tionary analysis of ribosomal ... See full document
7
Culture and Phenotypic Characterization of a Wolbachia pipientis Isolate
... and phylogenetic relationships: ...the sequences with all gaps omitted were calculated by use of a program designed by ...alignment analysis, distance matrix calculation, and construction of ... See full document
8
Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi
... cellulase sequences were obtained from the CAZy homepage ...the sequences obtained in this ...coding sequences were studied in the Bursaphelenchus genus using Ruehmaphelenchus ...acid ... See full document
12
Morphological and molecular characteristics of Homoeostrichus formosana sp. nov. (Dictyotaceae, Phaeophyceae) from Taiwan
... phylogenic trees based on SSU, psaA, psbA, and rbcL gene sequences supported that Homoeostrichus species are closely related to Exallosorus species but clearly separated from each others in addition to ... See full document
13
TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees
... although some of the above practices may be feasible for small datasets ...1000+ sequences to be ...FASTA sequences via color and/or annotation of tips/clades of interest in ...rDNA sequences ... See full document
6
Superinfection with drug resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort
... our analysis depended on sequences obtained in routine genotypic assays, the requirement for sequences from at least two time points per patient may have resulted in biased sampling of the study ... See full document
13
MOLECULAR CHARACTERIZATION OF CODING REGION OF LACTOFERRIN GENE OF MALABARI AND ATTAPPADY BLACK GOATS OF KERALA
... Phylogenetic analysis of the coding sequences of Lf gene of different species was done using MEGA version ...a phylogenetic tree was constructed using the Unweighted Pair Group Method with ... See full document
6
Evolutionary history of Simbu serogroup orthobunyaviruses in the Australian episystem
... Australia. Phylogenetic studies indicate that AKAV genogroups identified in Asia have re- mained extant and distinct over a long period at least from the 1980s until the ... See full document
13
A novel pancoronavirus RT PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium
... A pancoronavirus RT-PCR assay is a usefull tool to test for all coronaviruses in a clinical sample. Besides quick screening for several pathogens in one assay, it supplies the possibility to identify previously unknown ... See full document
10
Comparative Biochemical Characterization of L-Asparaginases from Four Species of Lactic Acid Bacteria
... and phylogenetic data from the KEGG. Phylogenetic analysis using the amino acid sequences of ASNases from the selected LAB strains was performed using the KEGG databases (Figure ...the ... See full document
13
The Adaptive Evolution Database (TAED)
... protein sequences, in the hope of drawing infer- ences about the relationship between fitness and sequence ...where some of the behavioral differences have a strong impact on fitness (are functional), and ... See full document
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