[PDF] Top 20 A MODEL FOR DNA SEQUENCE EVOLUTION WITHIN TRANSPOSABLE ELEMENT FAMILIES
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A MODEL FOR DNA SEQUENCE EVOLUTION WITHIN TRANSPOSABLE ELEMENT FAMILIES
... Evidence that Drosophila transposable element families are functionally dis- tinct comes from discrepancies between the lengths of the short direct repeats of target s[r] ... See full document
15
Tempo and Mode of Ty Element Evolution in Saccharomyces cerevisiae
... circular sequence consisting of a single LTR and the internal coding sequence is often excised from the ge- nome, leaving a solo LTR behind (Figure ...Ty families to avoid this ...over ... See full document
12
The Sleeping Beauty Transposable Element: Evolution, Regulation and Genetic Applications
... Beauty transposable element ...paired-like DNA-binding domain consisting of two helix-turn-helix motifs, PAI and RED, with a GRRR-motif (AT-hook) between ...the DNA cleavage and joining ... See full document
14
Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera
... three DNA transposons between ...larger element. For example, when compared to the planarian autonomous element, hAT-11 _SM, nhAT10_Hm_has the hallmarks of an internal deletion ...hAT-22_SM-like ... See full document
10
Transposable element invasions
... T ransposable elements have an ongo- ing, largely parasitic interaction with their hosts. We are interested in the tim- escale of this interaction. In a recent pub- lication, we have examined the sequence ... See full document
5
Investigation of the Origin and Spread of a Mammalian Transposable Element Based on Current Sequence Diversity
... mobile DNA elements, and their analysis is a vital part of understanding the human genome as a ...the evolution of modern mammals. The Golem family have been used as model transposons to highlight ... See full document
10
Transposable element detection from whole genome sequence data
... TE families have more specific integration site ...of DNA trans- poson) also prefer nucleosome-free regions and have a characteristic TSD sequence motif (nTnnnnAn) ...defined sequence ... See full document
9
Identification and Characterisation of five novel Miniature Inverted-repeat Transposable Elements (MITEs) in amphioxus (Branchiostoma floridae)
... two transposable elements have been previously reported in this ...I element named BfCR1 [18] and an unusual class II element called ATE-1 ...their DNA sequences revealed that LanceleTn-2 is ... See full document
7
Population Genetics and Molecular Evolution of DNA Sequences in Transposable Elements. I. A Simulation Framework
... transposon model of Navarro-Quezada and Schoen (2002) (but see Ohta 1985, Slatkin 1985, Brookfield 1986, and Hud- son and Kaplan 1986 for fundamental numerical approaches and Quesneville and Anxolabéhère 2001 and ... See full document
15
Evolution of the transposable element mariner in Drosophila species.
... If this model is correct, the gene phylogeny of mariner sequences among the species is expected to be congruent with the phylogeny of the species, and sequences homologou[r] ... See full document
11
EpiTEome: Simultaneous detection of transposable element insertion sites and their DNA methylation levels
... LINE element (ATLINE2) [12, ...generated DNA sequencing reads and epiTEome on the same dataset that we in silico bisulfite-converted assuming the genome-wide rates of CG and CH methylation (see ... See full document
10
Transposable element polymorphisms recapitulate human evolution
... and evolution [3, 18, 19, ...genome sequence has also been used to identify intact members of the youn- gest ...polymorphism within and between ... See full document
13
Molecular evolution of the Ac/Ds transposable-element family in pearl millet and other grasses.
... Sequence relationships between the pearl millet and maize Ac elements suggest the Ac/ Ds transposable-element family is ancient.. Further, the sequence identity betw[r] ... See full document
9
Effects of transposable elements on the expression of the forked gene of Drosophila melanogaster.
... Each box (exon) is named according to its location on the transcript. yeast and Drosophila is the insertion of transposable elements. The mechanism of transposable element mut[r] ... See full document
20
SEQUENCE EVOLUTION OF DROSOPHILA MITOCHONDRIAL DNA
... Analysis of nucleotide substitutions in the third position of codons of two- codon and four-codon families of Drosophila mitochondrial protein genes re- vealed relat[r] ... See full document
20
Changes in state of the Wx-m5 allele of maize are due to intragenic transposition of Ds.
... For most other maize transposable element alleles somatic sectors and germinal derivatives usually arise following element excision or deletions of element sequences.. [r] ... See full document
11
Distinct modes of promoter recognition by two iron starvation σ factors with overlapping promoter specificities
... 279 280 Identification of a non-canonical DNA sequence element that enhances OrbS activity 281 To identify DNA sequence features that are required for efficient recognition of OrbS-depen[r] ... See full document
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Discovery of the Transposable Element Mariner
... ner transposable elements in Drosophila: analysis of naturally Zhang, ...Drosophila transposable element mariner: identification modified version of the insect mariner-family transposable ... See full document
6
A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon.
... Although the Lytl TIR hybridizing sequences are present in species of both genera, the divergence of internal Lytl-hybridizing se- quences and differences in copy number appear[r] ... See full document
8
Chromosome Structure and Human Immunodeficiency Virus Type 1 cDNA Integration: Centromeric Alphoid Repeats Are a Disfavored Target
... chromosomal DNA is an essential and distinctive step in viral ...repeated-sequence DNA families, using a repeat-specific PCR- based ...naked DNA in vitro. Evidently the distinctive ... See full document
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