Bacterial and archaeal functional gene expression
Exploring the functional constraints on bacterial essential gene expression with CRISPRi
... same gene Our gfp based model predicts the activity of singly mismatched sgRNAs relative to the activity of the fully complementary sgRNA from which they are ...same gene should have the same ...within ...
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Switching in bacterial gene expression networks
... 3 gene expression and showed that a secretion- dependent feedback loop involving flagellar specific sigma factor, σ 28 , is responsible for partitioning cells into two ...
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Status of the Archaeal and Bacterial Census: an Update
... rRNA gene sequences is proceeding in the context of recent advances in high-throughput sequencing technolo- gies because full-length sequences are typically used as references for classification of the short ...
10
The functional landscape of mouse gene expression
... mouse expression data set and asked whether quantitative gene expression patterns corre- spond to functional gene ...many functional categories, consis- tent with the fact that ...
22
Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins
... Conclusions The present results show that the mode of evolution of the vast majority of the analyzed proteins from all three domains of life - bacteria, archaea and eukaryotes - is compatible with the rate-constancy ...
9
Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution
... that bacterial adaptation is enabled not only by changes in gene expression levels but also by shifts in gene expression ...variability. Gene expression variability ...
17
Growth Phase Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein
... in archaeal chromatin ...Genome-wide expression changes in histone deletion strains were global, significant but subtle in terms of fold change, bidirectional, and growth phase ...dependent gene ...
11
Gene expression of bacterial collagenolytic proteases in root caries
... evaluated bacterial collagenolytic protease gene expression within natural biofilms from RC compared with supragingival biofilms of RC-free individuals by RNA-seq data ...
12
Regulation of bacterial virulence gene expression by the host environment
... host-specific gene expression by Borrelia burgdorferi ...of bacterial virulence gene expression by the host environment ...1997 Bacterial toxins that target Rho proteins ...1997 ...
6
Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments
... of archaeal AmoB and bacterial ...the bacterial AmoB compared to the archaeal AmoB, leading to the observed differential sensitivity towards AgNPs found ...
38
Functional impact of genetic variation on gene expression
... on gene expression in humans, a very extensively studied ...and gene expression have been already performed with much greater sample size [56, ...to gene expression ...for ...
168
Gene expression and functional studies on psoriatic epidermis
... Several gene expression studies have been conducted on psoriatic ...the expression in both the epidermis and dermis or were analyzed by ...the gene expression profile of the psoriatic ...
86
Functional Genomics Analysis of Extremely Thermophilic Fermentative Microorganisms from the Archaeal Genus Pyrococcus and Bacterial Genus Caldicellulosiruptor.
... triggered in response to growth on cellulose compared to switchgrass in the C. saccharolyticus pure culture. Furthermore, given the level of homology between certain C. saccharolyticus specific probes in the region to ...
195
The Role of Bacterial Vectors in the Expression of Human IFN-y Gene
... The aim of this study was to isolate native cDNA IFN-y gene, to clone it in various expression vectors, to produce natural IFN-y prote in in E.coli and also to determine[r] ...
9
Generation and filtering of gene expression noise by the bacterial cell cycle
... To quantify the contribution of the mean cell cycle fluc- tuations (Fig. 1b) to protein production noise we split the single-cell production rate (which is distinct from the protein concentration) p( ϕ , x ) into the ...
10
Consensus clustering and functional interpretation of gene expression data
... contain gene subsets that are co-regulated by common transcriptional control networks or are coexpressed to participate in cellular processes that together manifest a global phenotype of the cell or ...high ...
16
Consensus clustering and functional interpretation of gene expression data
... contain gene subsets that are co-regulated by common transcriptional control networks or are coexpressed to participate in cellular processes that together manifest a global phenotype of the cell or ...high ...
18
A functional profile of gene expression in ARPE-19 cells
... the gene expression profile of these cells, which will than lay the foundation for further molecular characterization of RPE cells in both normal and diseased ...
10
The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species
... This approach has enabled the description of over 146 new species, with an average of three species per month since April 2018. We now report new isolated species using a new format, known as the new species an- ...
11
A functional study of bacterial orthologues of the malarial plastid gene, ycf 24
... structures. This was unlikely to be contamination as a similar, if less severe, result was seen in the previous knockout experiment using linear yc/24Spl-pB SK S+ only. Also, no contamination was seen elsewhere on the ...
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