basic local alignment search tool (BLAST)
Proteomic analysis of purified protein derivative of Mycobacterium tuberculosis
... BLAST: Basic Local Alignment Search Tool; CFP10: Culture filtrate antigen EsxB; EF-Tu: Elongation factor 2; EsxJ: ESAT-6 like protein EsxJ; EsxO: ESAT-6 like protein EsxO; ESAT-6: Early ...
9
Identification of diverse full length endogenous betaretroviruses in megabats and microbats
... BLAST: Basic local alignment search tool; cDNA: Complementary deoxyribonucleic acid; CTE: Constitutive transport element; DR: Direct nucleotide repeat; DNA: Deoxyribonucleic acid; DSN: ...
19
STINGRAY: system for integrated genomic resources and analysis
... BLAST: Basic local alignment search tool; CDS: Coding sequences; CGI: Common gateway interface; DBMS: Database management system; DDBJ: DNA Data Bank of Japan; EMBOSS: The European ...
9
Pulmonary arterial response to Angiostrongylus vasorum in naturally infected dogs: echocardiographic findings in two cases
... BLAST: Basic Local Alignment Search Tool; ECG: electrocardiogram; ET: ejection time; IFAT: immunofluorescence antibody test; IPAVAs: intrapulmonary arterio- venous anastomoses; LV: left ...
8
Molecular surveillance of respiratory viruses with bioaerosol sampling in an airport
... (BLAST): Basic Local Alignment Search Tool; (cDNA): complementary deoxyribonucleic acid; (DNA): deoxyribonucleic acid; (MERS-CoV): middle east respiratory syndrome coronavirus; (NCBI): ...
5
Identification of Bacteria from Soil of Cameron Highlands
... From this study, only the bacteria Bacillus pumilus was successfully identified from the soil of Cameron Highlands. The growth of bacteria colonies were observed through its morphology and the color of the culture. The ...
9
Age and fecal microbial strain specific differences in patients with spondyloarthritis
... bioinformatics tool in combination with the Basic Local Alignment Search Tool (BLAST) that permitted assessment of species and even strain-level identification of certain ...
10
Purification and Biochemical Characterization of a Protease Inhibitor II Family from Jalapeño Pepper (Capsicum annuum L )
... BAEE: N-α-benzoyl-L-arginine ethyl ester BCA: Bicinconinic acid to determinated protein BLAST: Basic local alignment search tool algorithm CD: Circular dichroism CID-MS: Collision-induce[r] ...
9
Euphorbia tirucalli modulates gene expression in larynx squamous cell carcinoma
... XLS 74 kb Abbreviations ACTB: beta-actin; AKt: protein kinase; ANXA1: annexin A1; APC: adenomatous polyposis coli; BLAST: basic local alignment search tool; C3: C3 convertase enzyme; C5:[r] ...
10
Ca2+ regulatory proteins in cardiomyocytes from the right ventricle in children with congenital heart disease
... Abbreviations ANOVA: one-way analysis of variance; BLAST: Basic Local Alignment Search Tool; CaMKII: Ca2+/calmodulin-dependent protein kinase II; CASQ: Calsequestrin; CHD: Congenital Hea[r] ...
10
CABRA: Cluster and Annotate Blast Results Algorithm
... The most extended way to functionally annotate a sequence is using basic local alignment search tool (BLAST) searches [1] and the orthology information drawn from them. These are ...
6
Molecular signature of selective microRNAs in Cyprinus carpio (Linnaeus 1758):a computational approach
... BLAST: Basic local alignment search tool; ccr: Cyprinus carpio ; CD11b: Cluster of differentiation molecule 11B; DGCR8: Digeorge syndrome chromosomal [OR CRITICAL] region 8; Erk-1/ 2: ...
8
Bovine leukemia virus discovered in human blood
... (Basic Local Alignment Search Tool) site was to compare primer specificity for only two spe- cies: bovine leukemia virus and Homo sapiens, and to insure that the primers we used were ...
10
A novel real time PCR assay for specific detection of Brucella melitensis
... BLAST: Basic local alignment search tool; BSL: Biosafety level; CCUG: Culture Collection University of Göteborg; Cq: Quantification cycle; DNA: Deoxyribonucleic acid; EMERGE: Efficient ...
6
Multi-objective Differential Evolution for the Flow shop Scheduling Problem with a Modified Learning Effect
... another search method to improve the performance of the ...neighborhood search (VNS) incorporated within their ...insert-based local search to tackle the mentioned problem. The local ...
10
Consistency Aware Search for Word Alignment
... an alignment conforms to the consistency ...the alignment (phrase count for short), which is easy and efficient to calculate during search (Deng and Zhou, ...
10
ANNALIST - ANNotation ALIgnment and Scoring Tool
... The increased interest in semantic annotations systems brings with it an increased requirement to evaluate such systems, both for purposes of system development and for assessing the utility of systems for specific ...
7
TarO : a target optimisation system for structural biology
... TarO (http://www.compbio.dundee.ac.uk/taro) offers a single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural biology techniques. The protein sequence is ...
7
Biasing Attention Based Recurrent Neural Networks Using External Alignment Information
... In this work, we train the attention and the align- ment model separately. We obtain the alignments using IBM/HMM training. While this breaks up the simplicity of end-to-end training of attention models, we want to note ...
10
Comparative Analysis of Structure and Sequences of Oryza sativa Superoxide Dismutase
... From the investigation results of local BLAST search of Oryza sativa Mn SODs have an average of 63.5% similarity to one another. This is in conformity with the findings of Bowler et al., [2]. According to ...
11