Bioinformatics analysis of high throughput data
Statistical Algorithms and Bioinformatics Tools Development for Computational Analysis of High-throughput Transcriptomic Data
... Malus domestica is the domesticated apple tree and is grown worldwide. This species has resulted from a hybridization between its primary wild ancestor, Malus sieversii, the European crab apple, Malus sylvestris, and ...
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High-throughput bioinformatics with the Cyrille2 pipeline system.
... in high-throughput pipeline analysis is the storage of intermediate ...intermediate data is undesirable, for example because of disproportional usage of storage capacity, it is straightforward ...
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Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High Throughput Sequencing Data Sets
... of high-throughput sequencing-based virus diagnostics have not yet been established as a mandatory approach for ensuring comparable ...viral high-throughput sequence data ...
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Proficiency testing of virus diagnostics based on bioinformatics analysis of simulated in silico high-throughput sequencing data sets
... of high-throughput sequencing-based virus diagnostics have not yet been established as a mandatory approach for ensuring comparable ...viral high-throughput sequence data ...
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Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets
... of high-throughput sequencing-based virus diagnostics have not yet been established as a mandatory approach for ensuring comparable ...viral high-throughput sequence data ...
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msBiodat analysis tool, big data analysis for high-throughput experiments
... Keywords: Bioinformatics, Data analysis, Proteomics, Data mining, Mass spectrometry, High-throughput analysis Background High-performance techniques, such as mass ...
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Proficiency testing of virus diagnostics based on bioinformatics analysis of simulated in silico high-throughput sequencing datasets
... 424 18. Scheuch M, Hoper D, Beer M. 2015. RIEMS: a software pipeline for sensitive and comprehensive 425 taxonomic classification of reads from metagenomics datasets. BMC Bioinformatics 16:69. 426 19. Vilsker M, ...
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A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection
... HTS bioinformatics analysis for novel virus ...genomic data analyses, efforts were made to also reduce the cellular ...a high nucleotide sequence identity level, while TBLASTX analysis ...
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High-throughput Data Analysis of Proteomic Mass Spectra on the SwissBioGrid
... of data so that data analysis requires large ...as data and results sharing between geographically scattered ...particular high energy physics) was one of the main early drivers, other ...
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The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
... reproducible analysis platform For the fast dissemination of the RNA workbench, as well as for an easy integration with other HTS analysis tasks, we implemented the RNA workbench within the Galaxy ...
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The RNA workbench: Best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
... reproducible analysis platform For the fast dissemination of the RNA workbench, as well as for an easy integration with other HTS analysis tasks, we implemented the RNA workbench within the Galaxy ...
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High-Throughput Bioinformatics Approaches to Understand Gene Expression Regulation in Head and Neck Tumors.
... integrative analysis of RNA-seq and SNP-array datasets on head and neck squamous cell ...microarray data, we were able to more deeply characterize the difference between the two subgroups by analyzing ...
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Advances in Bioinformatics : contributions to high-throughput proteomics-based identification, quantification and systems biology
... of data; for instance, accuracy of mass spectrometres improved at a pace the identification algorithms could not follow, and even though many more, better spectra were produced by new machines, and hence more ...
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Comprehensive Human Virus Screening Using High Throughput Sequencing with a User Friendly Representation of Bioinformatics Analysis: a Pilot Study
... in bioinformatics make more informed decisions, as all detection results are easy to ...This bioinformatics pipe- line was developed using positive clinical specimens and is de- signed to processes HTS ...
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Development of Bioinformatic Tools for Retroviral Analysis from High Throughput Sequence Data
... sequencing data, assemblies, structural and functional annotation and taxonimic information are synchronized by the International Nucleotide Sequence Database Collaboration (INSDC), including the DNA Data ...
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A bioinformatics framework for management and analysis of high throughput CGH microarray projects
... The framework includes: a Laboratory Information Management System LIMS that manages and records all aspects of microarray CGH experimentation; a set of easy to use visualisation tools f[r] ...
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Bioinformatics for High-throughput Virus Detection and Discovery
... 95 is theoretically applicable to any diagnostic scenario where positive control specimens are available for use as training data. Traditional diagnostics fail to detect recombination since they are focused on the ...
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High-Throughput Sequencing and Metagenomic Data Analysis
... is high and stable due to the utilizing of a chemical sensor instead of fluorescence and ...its high speed and low cost compared with pyrosequencing and Illumina ...
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High-Throughput, Large-Scale SNP Genotyping: Bioinformatics Considerations
... strategies 19 ] . 4. Conclusion Automated pipelines and management of down- stream data require considerable investment in software engineering. Although not designed from the outset with the ultimate goal of ...
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Methods for Accurate Analysis of High-Throughput Transcriptome Data
... In agreement with the estimate obtained using the first set of quality metrics, the inferred probability for low quality chips was .394 using the Expression Console quality indicators. At a qualitative level, the ...
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