COMPARATIVE SEQUENCE ANALYSIS OF THE
GATA: a graphic alignment tool for comparative sequence analysis
... for comparative sequence ...conserved sequence elements are ...against sequence inversions, and minimize sequence duplications and feature ...plot analysis is often used to ...
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Identification of Mycobacterial Species by Comparative Sequence Analysis of the RNA Polymerase Gene (rpoB)
... method. Comparative sequence analysis of rpoB DNAs provided the basis for species differentiation within the genus ...low-level sequence divergence among strains of the same species, all of ...
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Structure of the 5′ Nontranslated Region of the Coxsackievirus B3 Genome: Chemical Modification and Comparative Sequence Analysis
... by comparative sequence analysis and energy minimization, shows seven domains (I to ...structural analysis, the model lacks comprehensive experimental ...modification analysis to ...
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Comparative sequence analysis of human cytomegalovirus strains
... Amino acid sequence comparison of selected areas within the gp58/116 gene of the laboratory strains AD169 and Towne with those of clinical isolate 1 PCR, 3 PCR, 4 PCR, 2 PCR, and 5 PCR ([r] ...
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Comparative Sequence Analysis and Patterns of Covariation in RNA Secondary Structures
... plotted. the initial identification step, we chose parameter values that would keep computation time reasonable by lim- iting the total number of potential helices. In practice, Drosophila bcd mRNA, and eukaryotic SSU ...
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Comparative Sequence Analysis of the Largest E1A Proteins of Human and Simian Adenoviruses
... this sequence analysis suggests the possi- bility that at least some of the E1A proteins may interact with SH3 domain-containing proteins or liganded nuclear hormone ...
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Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions
... The results showed that the apicoplast genomes from C. cayetanensis strains are highly conserved with a few dis- tinct polymorphisms. We identified 25 SNPs spanning the apicoplast genome, and a unique 30 bp- long repeat ...
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Comparative sequence analysis and tissue localization of members of the SLC6 family of transporters in adult Drosophila melanogaster
... Drosophila SLC6 have similar structural features to the leucine transporter from Aquifex aeoliscus The crystal structure of a bacterial Na + -dependent leucine transporter homologous with mammalian SLC6 was recently ...
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Comparative analysis of IGFBP 3 gene sequence in Egyptian sheep, cattle, and buffalo
... Egyptian breeds from different species require the determination and characterization of several candidate genes responsible for the alteration of the economic traits behaviour. The objective of this study was to detect ...
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Sequence Conservation Metrics: Implementation and Comparative Analysis
... Multiple Sequence Alignments (MSAs) help identify regions of similarity and dissimilarity between its constituent sequences, which is essential in understanding structural, functional and evolutionary ...
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Complete Genome Sequence and Comparative Genomic Analysis of
... Fig. 1. Circular representation of the M. massiliense JCM 15300 genome and comparative analysis among the complete genomes of Mycobacterium species. A. BLAST atlas of M. massiliense JCM 15300. The coding ...
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Comparative study of Chronological Construction Sequence Analysis and Conventional analysis
... do Analysis of the stability requirements for these incomplete, irregular, and constantly changing ...Construction Sequence Analysis‟ that reflects the fact of the sequential application of ...
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AIML and sequence-to-sequence models to build artificial intelligence chatbots: insights from a comparative analysis
... the Sequence-to-Sequence ...the Sequence-to- Sequence model, dialogs between end-users and agents can be regarded as a mapping of one sequence of words representing the request to ...
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Characterization of the signal sequence binding domain of Ffh by genetics and comparative analysis
... random sequence approach to identify amino acids important for activity of the finger loop ...structural analysis as a ~20 amino acid domain with the unusual properties of being both hydrophobic and exposed ...
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Comparative vertebrate genomic sequence analysis studies based on Fugu rubripes
... 5-2-3 Comparative genomic sequence analysis The PIP plot depicted in figure 5-7 compares the Fugu sequence to the available human, mouse and Tetraodon draft ...genomic sequence is ...
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Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
... contain long disordered sections that are also of functional importance. The CATH database which focuses on the folded domain, classifies structures in the PDB into their constituent domains, and each domain is ...
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Nucleotide sequence of human adenovirus type 12 DNA: comparative functional analysis.
... A fresh inoculum of human adenovirus type 12 (Adl2) was obtained from the American Type Culture.. Collection and passaged once on human embryonic kidney cells, and Ad12 DNA was prepared [r] ...
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Epidermodysplasia verruciformis-associated human papillomavirus 8: genomic sequence and comparative analysis.
... HPV8 stands out by several unique features: (i) the considerably reduced size of the noncoding region (397 base pairs), with a seemingly low potential for forming complex secondary struc[r] ...
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Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny
... Science 2006, 313:1596-1604. 5. Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, ...
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Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
... multiple sequence align- ments of the TE families, selecting only sequences that had the highest sequence similarity, and thus should represent the most recent transposon insertion events in the ...
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