comparative transcriptome analysis
Comparative transcriptome analysis of non model Taxus species for taxol biosynthesis
... This transcriptome analysis did not reveal all of the enzymes involved in taxol ...conditions.This comparative transcriptome analysis of non- model plants revealed that the enzymes ...
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Original Article Comparative transcriptome analysis using RNA-Seq screening reveals critical genes and regulatory mechanisms of gastric carcinogenesis involved in helicobacter pylori infections and CagA
... ered to be one of the most important virulence factors of this bacteria. Many studies have investigated the mechanisms of H. pylori and CagA. Via the type IV secretion system (TFSS), CagA can translocate into host ...
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Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi
... coexpression analysis revealed that expression of biosynthetic genes correlates with expression of genes associated with pathways responsible for the generation of precursor metabolites for secondary ...
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Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity
... this analysis provides a list of candidate regulators of MAPC self-renewal that will need to be validated using functional studies to elucidate their role in self-renewal and differentiation potential of adult ...
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Comparative transcriptome analysis to investigate the high starch accumulation of duckweed (Landoltia punctata) under nutrient starvation
... To verify the reliability of the NGS-based expression levels, 50 transcripts were chose randomly from the anno- tated transcripts set for primer design (Additional file 7: Table S6) and real-time quantitative RT-PCR ...
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Differential radiation response between normal astrocytes and glioma cells revealed by comparative transcriptome analysis
... Abstract: Normal astrocytes are more resistant to radiation than glioma cells. Radiation-resistant glioma cells and normal astrocytes usuallly share similar mechanisms of radioresistance. Investigation of the underlying ...
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Comparative transcriptome analysis reveals the genetic basis underlying the biosynthesis of polysaccharides in Hericium erinaceus
... In our research, we carried out de novo transcriptome sequencing, assembly, and annotation of six H. erina- ceus strains. Extensive transcriptome datasets of the six strains were generated. Moreover, ...
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Comparative transcriptome analysis of second and third generation merozoites of Eimeria necatrix
... global analysis of gene transcription has not yet to be performed for every stage of the coccidian life-cycle, due in part to difficulties in producing sufficient quantities of parasitic material for conventional ...
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Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)
... synthesized by the plant [73]. It contains two parts: 4-amino-5-hydroxymethyl-2-methylpyrimidine phos- phate (pyrimidine) and 4-methyl-5-(2-hydroxyethyl)- thiazole phosphate (thiazole) [74–76]. Pyrimidine synthesis ...
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Comparative transcriptome analysis of berry-sizing effects of gibberellin (GA3) on seedless Vitis vinifera L.
... The results from soil analysis indicated the pH ranges from extremely acidic (4.57) to slightly acidic (6.87) (Table 2). About 65% of the sampled fields had soil pH ranging between 5 -8, which is optimum for maize ...
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Comparative transcriptome analysis reveals a regulatory network of microRNA-29b during mouse early embryonic development
... (RPKM) for each gene were further adjusted by the mean value of each sample as described [31]. To identify differentially expressed genes (DEGs) between groups, we combined Student's t-test and a fold-change criterion: A ...
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Comparative Transcriptome Analysis of Gene
... order to investigate the influence of different light intensity distributions on tomato plant.. 19.[r] ...
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Comparative transcriptome analysis of two contrasting kiwifruit ( Actinidia ) genotypes under waterlogging stress
... The flooding events have occurred with increasing frequency under the influence of global climate change [1]. The sustainability of irrigated agriculture has been threatened by this stress for centuries [2]. One direct ...
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Comparative transcriptome reveal the potential adaptive evolutionary genes in Andrias davidianus
... habitat, transcriptome data of other amphibian species were obtained from GenBank, and comparative transcriptome analysis was carried out to detect genes positively selected for in ...
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Genome wide assessment of differential effector gene use in embryogenesis
... for the recovery of each cell type. (Ac-Fc) Color-coded data points (orange spectrum represents higher density) are correlated with cell volume; events contained within the red demarcation were visually corroborated to ...
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Transcriptome analysis of woodland strawberry (Fragaria vesca) response to the infection by Strawberry vein banding virus (SVBV)
... scriptome analysis of Nicotiana tabacum infected with Cucumber mosaic virus (CMV) suggested that, the changes in pigment metabolism pathway may be directly responsible for the disease development ...[9]. ...
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Biological Responses to Therapeutic Treatments of Human Vascular Diseases
... Adoption of RNA-seq as the de facto tool for study of the transcriptome has been rapid. Since its introduction in 2008, over 14,000 RNA-seq-related papers have been published (PubMed, late 2018), including more ...
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Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants
... is a unique step and is patent protected. Furthermore, incorporation of DNA nanoball (DNB) technology during the library construction steps in BGISEQ-500 has yielded several benefits. Initially, the formation of DNA ...
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Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus
... spleen transcriptome of the Chinese giant salamander using Solexa sequencing technology, compara- tive transcriptome analysis indicated that only 293 genes were down-regulated and 220 genes were ...
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Dynamics of the Lipid Droplet Proteome of the Oleaginous Yeast Rhodosporidium toruloides
... RT-qPCR analysis. The cell pellets harvested from 1 ml culture broth of R. toruloides were immediately frozen in liquid nitrogen and stored at ⫺ 70°C. Total RNA was isolated from about 30- to 50-mg cell samples ...
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