Differentially expressed metabolism and transport genes
Identification of aberrantly methylated differentially expressed genes targeted by differentially expressed miRNA in osteosarcoma
... several differentially methylated genes (DMGs) and differentially expressed genes (DEGs) in OS through bioinformatics analysis ...and differentially expressed miRNAs ...
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Pomelo II: Finding differentially expressed genes
... regulated genes in each two- class comparison and their intersection ...of genes that are up regulated in both the contrast between classes 0 and 1 and the contrast between ...
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Statistical methods for ranking differentially expressed genes
... Background Microarray technology has revolutionized modern biological research by permitting the simultaneous study of genes com- prising a large part of the genome. The blessings stemming from this are ...
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IDENTIFICATION OF DIFFERENTIALLY EXPRESSED GENES USING BI CLUSTERING
... the genes responsible for causing a disease, we use Biclustering technique which is also a useful co-clustering ...these differentially expressed gene modules, the anticipated method finds biclusters ...
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Identification of Differentially Expressed Genes in Papillary Thyroid Cancers
... specific genes, including tumor suppressor genes, oncogenes, apoptosis-associated genes and other predisposing ...However, genes, signaling pathways, and other basic mechanisms are cur- rently ...
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Detection of differentially expressed genes involved in osteoarthritis pathology
... TWIST1 can regulate FOS expression in the transcrip- tional regulatory network, and TWIST1 and FOS interact with each other in the PPI network. Kinne et al. found that compared to patients with OA or normal joints, c-fos ...
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Analysis of Differentially Expressed Genes in Neuroendocrine Carcinomas of the Lung
... ingly, areas with NE morphology did not show positive reaction for anti-NNAT antibody (Figure 2a). As for the three general NE markers—CGA, SYN and CD56 —10 LCNECs expressed multiple general NE markers; four ...
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Aberrantly methylated-differentially expressed genes and pathways in colorectal cancer
... methylated-differentially expressed genes and pathways in CRC by joint bioinformatics analysis of both gene expression and gene methylation microarrays, which may contribute to the finding of ...
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Microarray analysis of differentially expressed genes in the brains of tubby mice.
... Obesity with hyperphagia and insulin resistance was re- cently reported in Cck2r deficient mice (Clerc et al., 2007). However, mechanisms of hyperphagia and obesity in Cck2r deficient mice are not fully elucidated. ...
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Evaluation of Some Statistical Methods for the Identification of Differentially Expressed Genes
... The focus of the present study is a comparison of the top performing and popular methods SAM, samroc, rank product, and fold change along with modified versions of the SAM method and the fold change rule. As it is ...
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Differentially expressed genes between systemic sclerosis and rheumatoid arthritis
... core genes and pathways that differentiate SSc and ...up-regulated genes in SSc were related to extracellular activities, whereas the down-regulated genes were mainly related to immune ...
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Statistical Tests for Identification of Differentially Expressed Genes in Microarray Data
... experiments, differentially expressed genes, or discriminator genes, are the genes with considerably different expression patterns in two user-defined ...of genes, and which ...
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Chilling susceptibility in mungbean varieties is associated with their differentially expressed genes
... bility to stress, serve as good materials for uncovering how they differ in chilling tolerance. This study aimed to identify the ultrastructural, physiological and molecular changes to provide new insights on the ...
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Identification of Differentially Expressed Genes with Artificial Components the acde Package
... regulated genes (green) lie at the origin of the artificial plane so they have low or zero expression levels in all replicates 5 ...defence genes that would normally have low expression levels but become ...
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Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes
... of genes that are seemingly downregulated in unfavourable tumours, ...as differentially expressed in NB tumours in several independent research studies [14,15,18,31-36] (Table ...12 genes ...
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Microarray data quality control improves the detection of differentially expressed genes
... Microarray Quality Outlier Microarrays have become a routine tool for biomedical research. Data quality assessment is an essential part of the analysis, but it is still not easy to perform objectively or in an automated ...
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ORdensity: user-friendly R package to identify differentially expressed genes
... of genes, different numbers of cores and different number of permutations used in the bootstrap ...107 genes as potential DEGs and clustered them in two clusters with 83 and 24 genes ...of ...
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Identification of Differentially-expressed Genes in Intestinal Gastric Cancer by Microarray Analysis
... In this study, we performed a 22 K oligonucleotide micro- array analysis on 20 intestinal GC tissue samples and 20 NATs adjacent to tumors of intestinal GC in comparison with the five normal samples, respectively. Gene ...
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Tool for the identification of differentially expressed genes using a user-defined threshold
... making sense of the gene expression patterns which result from differing experiments. Detecting considerable increases or decreases in mRNA expression between experiments may lead to the discovery of significant ...
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Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
... step, genes are classified into two exclusive classes, genes with or without over-dispersion, by using an adjusted score test on the hypothesis of whether or not the over-dispersion is present within the ...
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