Expressed Sequence Tag (ESTs)
Analysis of Expressed Sequence Tag Loci on Wheat Chromosome Group 4
... A total of 1918 loci, detected by the hybridization of 938 expressed sequence tag unigenes (ESTs) from 26 Triticeae cDNA libraries, were mapped to wheat (Triticum aestivum L.) homoeologous group 4 ...
14
Expressed Sequence Tag Analysis of the Human Pathogen Paracoccidioides brasiliensis Yeast Phase: Identification of Putative Homologues of Candida albicans Virulence and Pathogenicity Genes
... brasiliensis expressed sequence tag (EST) sequences (The ...database sequence matches (putative homologues) were divided into highly significant (P ⱕ 10 ⫺19 ), moderately significant (1e-10 to ...
15
Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters
... (Expressed Sequence Tag) corresponds to messenger RNAs (mRNAs) transcribed from the genes residing on ...EST sequence represents a fragment of mRNA, and the EST assembly aims to re-construct ...
10
Comparison of Quantitative Trait Loci for Adaptive Traits Between Oak and Chestnut Based on an Expressed Sequence Tag Consensus Map
... To compare QTL positions between Quercus and Castanea, linkage groups were aligned to identify ortho- logous genomic regions. In previous work, seven linkage groups were aligned between these two species using ...
14
A Chromosome Bin Map of 16,000 Expressed Sequence Tag Loci and Distribution of Genes Among the Three Genomes of Polyploid Wheat
... the expressed portion is a logical first step for gene ...7104 expressed sequence tag (EST) unigenes by Southern hybridization into a chromosome bin map using a set of wheat aneuploids and ...
12
A Chromosome Bin Map of 2148 Expressed Sequence Tag Loci of Wheat Homoeologous Group 7
... Bio/Technology 12: 276–278. Sorrells, M. E., M. La Rota, C. E. Bermudez-Kandianis, R. A. Lazo, G. R., S. Chao, D. D. Hummel, H. Edwards, C. C. Crossman Greene, R. Kantety et al., 2003 Comparative DNA sequence et ...
14
Genetic diversity analysis in Malaysian giant prawns using expressed sequence tag microsatellite markers for stock improvement program.
... Genetic diversity analysis in Malaysian giant prawns using expressed sequence tag microsatellite markers for stock improvement program.. K.H.[r] ...
10
Changes on microsatellites of expressed sequence tag of sugarcane (Saccharum spp) during vegetative propagation.
... The conclusion and recommendation from our study is that the comparison among different sugarcane varieties in order to find the contrasting genotypes should be made using varieties in the same cutting stage since that ...
10
A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and Comparative Genomics in Ambystoma
... Expressed sequence tag (EST) markers were developed for Ambystoma tigrinum tigrinum (Eastern tiger salamander) and for A. mexicanum (Mexican axolotl) to generate the first comprehensive linkage map ...
11
Evaluating the Significance of Global and Local Features in Expressed Sequence Tag: A Clustering Quality Perspective
... every sequence in a singleton cluster, and the clusters will be merged based on a series of similarity ...that sequence A and sequence B are in the same cluster even if they share no similarity but ...
5
Development of an Expressed Sequence Tag (EST) Resource for Wheat (Triticum aestivum L.)
... of expressed sequence tags (ESTs) representing genes onto the seven homoeologous chromosome groups and a global analysis of the entire mapped wheat EST data ...sequencing, sequence processing, EST ...
10
Construction and Evaluation of cDNA Libraries for Large-Scale Expressed Sequence Tag Sequencing in Wheat (Triticum aestivum L.)
... A total of 37 original cDNA libraries and 9 derivative libraries enriched for rare sequences were produced from Chinese Spring wheat (Triticum aestivum L.), five other hexaploid wheat genotypes (Cheyenne, Brevor, TAM ...
14
PGBD5: a neural-specific intron-containing piggyBac transposase domesticated over 500 million years ago and conserved from cephalochordates to humans
... single expressed sequence tag (EST) clone CX757968 was annotated as joining a remote 5′ exon in frame to the downstream ...exclusively expressed in the brain, with preferential expression in ...
17
Construction of a full-length cDNA Library from Chinese oak silkworm pupa and identification of a KK-42-binding protein gene in relation to pupa-diapause termination
... 95%. Expressed sequence tag (EST) analysis was used to characterize the li- ...Protein sequence analysis showed that ApKK42-BP was not a membrane protein but an extracellular protein with a ...
7
Foreign genes and novel hydrophilic protein genes participate in the desiccation response of the bdelloid rotifer Adineta ricciae
... an expressed sequence tag (EST) library enriched for genes that are active during desiccation stress and characterised a subset of clones of both recognised and novel ...
10
Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters
... Job Execution Manager: submit Job Distributor jobs through CondorG using Grid HPC/Condor pool MyProxy birdbath WS interface Resource Connector Server Condor resource connector by manages[r] ...
22
Evolutionary Expressed Sequence Tag Analysis of Drosophila Female Reproductive Tracts Identifies Genes Subjected to Positive Selection
... gaster : YP1, YP2, and YP3 (Barnett et al. 1980). These genes Our first goal in carrying out this EST screen was to were screened out of the library since yolk protein RNAs are identify a suite of genes whose products ...
10
Candidate chemosensory Genes in Female Antennae of the Noctuid Moth Spodoptera littoralis
... The noctuid moth Spodoptera littoralis is one of the major Lepidoptera models used in olfaction re- search. This polyphagous noctuid species is an im- portant cotton pest, and extensive research has led to a ...
15
The Use of Sequence Based SSR Mining for the Development of a Vast Collection of Microsatellites in Aquilegia formosa
... Numerous microsatellite markers were developed for Aquilegia formosa from sequences depo- sited within the Expressed Sequence Tag (EST), Genomic Survey Sequence (GSS), and Nucleotide databases ...
12
Molecular characterization of Turkish onion germplasm using SSR markers
... RESULTS AND DISCUSSION For the 96 onion accessions, 19 EST-SSRs expressed sequence tag-simple sequence repeat microsatellites and 27 gSSRs genomic microsatellites, a total of 46 markers,[r] ...
6