Expressed Sequence Tags
CoccoExpress: Database of Expressed Sequence Tags of Coccolithophorids
... Index Terms--Coccolithophorids, Dynamic Programming, Emiliania Huxleyi, Expressed Sequence Tags, Marine alga I. I NTRODUCTION Bioinformatics, the science of using computational techniques to solve ...
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Transcriptome analysis for Caenorhabditis elegansbased on novel expressed sequence tags
... novel expressed sequence tags from first larval stage worms utilizing high-throughput sequencing ...sequenced expressed sequence tags map completely or partially to genomic ...
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Expressed sequence tags related to nitrogen metabolism in maize inoculated with Azospirillum brasilense.
... two expressed sequence tags (ESTs) codifying for key enzymes in nitrogen metabolism in maize, nitrate reductase (ZmNR), and glutamine synthetase (ZmGln1-3) was performed for genotypes inoculated with ...
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Analysis of expressed sequence tags in developing secondary xylem and shoot of Acacia mangium
... For the purpose of the production of wood and reforesta- tion, fast-growing trees have been planted worldwide. Nev- ertheless, breeding programs, which mostly target the improvement of wood properties, are still at a ...
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Characterization of simple sequence repeats (SSRs) from Phlebotomus papatasi (Diptera: Psychodidae) expressed sequence tags (ESTs)
... Simple sequence repeats (SSRs) were characterized in P. papatasi expressed sequence tags (ESTs) derived from a public database, National Center for Biotechnology Information ...
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Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensisand the evolution of secreted proteins in parasites
... Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted pro- teins in ...
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Computational identification of miRNA and targets from expressed sequence tags of coffee (Coffea arabica)
... According to miRBase (a public miRNA database) a total of 18,226 miRNAs have been deposited (Griffiths-Jones et al., 2006) of which 4014 plant miRNAs have been currently iden- tified from 52 different species. ...
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Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis
... 29. Boguski MS, Lowe TM, Tolstoshev CM: dbEST – database for "expressed sequence tags". Nat Genet 1993, 4(4):332-333. Additional file 2 Supplemental Table 2, Excel spreadsheet; Summary of BLAST ...
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Construction of cDNA library and preliminary analysis of expressed sequence tags from Siberian tiger
... 7. Wsheeler DL, Church DM, Federhen S, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2003; 31(1): 28-33. 8. Thanh T, Chi VT, Abdullah MP, et al. Construction of cDNA ...
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Generation, analysis and functional annotation of expressed sequence tags from the ectoparasitic mite Psoroptes ovis
... DNA sequence or large scale transcript datasets are available and prior to this study only 484 ...ovis expressed sequence tags (ESTs) were accessible in public ...
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Use of expressed sequence tags as an alternative approach for the identification of Taenia solium metacestode excretion/secretion proteins
... Bjorn Victor 1* , Pierre Dorny 1 , Kirezi Kanobana 2 , Katja Polman 2 , Johan Lindh 3,4 , André M Deelder 5 , Magnus Palmblad 5 and Sarah Gabriël 1 Abstract Background: Taenia solium taeniasis/cysticercosis is a zoonotic ...
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Expressed sequence tags from Atta laevigata and identification of candidate genes for the control of pest leaf cutting ants
... Results: The analysis of the expressed sequence tags allowed us to characterize 2,006 unique sequences in Atta laevigata. Sixteen of these genes had a high number of transcripts and are likely ...
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Pilot survey of expressed sequence tags (ESTs) from the asexual blood stages of Plasmodium vivax in human patients
... of expressed sequence tags (ESTs) from the asexual blood stages of ...consensus sequence of each cluster and the unique sequences of the singlets were used in similarity searches against ...
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Porcine transcriptome analysis based on 97 non normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
... million expressed sequence tags (ESTs) were used, of which approximately two- thirds were generated in this study and the remaining one- third of ESTs are from public ...are expressed in a ...
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Chromosome Bin Map of Expressed Sequence Tags in Homoeologous Group 1 of Hexaploid Wheat and Homoeology With Rice and Arabidopsis
... 944 expressed sequence tags (ESTs) generated 2212 EST loci mapped to homoeologous group 1 chromosomes in hexaploid wheat (Triticum aestivum ...
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Expressed sequence tags (ESTs)?based computational identification of novel and conserved microRNAs in turmeric (Curcuma longa L.)
... EST, expressed sequence tags; cDNA’s, complementary DNAs Introduction The discovery of novel regulatory RNAs opened a new horizon in molecular biology ...
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Expressed Sequence Tags With cDNA Termini: Previously Overlooked Resources for Gene Annotation and Transcriptome Exploration in Chlamydomonas reinhardtii
... reinhardtii expressed sequence tags (ESTs) in GenBank dbEST and community EST assemblies were either over- or undertrimmed in terms of their cDNA termini, which are defined as the diagnostic ...
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Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-Maydis Identify Novel Genes Expressed During Vegetative, Infectious, and Reproductive Growth.
... of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-Maydis Identify Novel Genes Expressed During Vegetative, Infectious, and Reproductive ...
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Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)
... of expressed sequence tags (ESTs) has been generated to understand parasitism at molecular level and for predicting excretory/secretory proteins for developing novel strategies to tackle parasitic ...
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Identification and characterization of thirty novel microsatellite DNA markers from the Chinese mitten crab Eriocheir sinensis expressed sequence tags
... 7. Gao XG, Li HJ, Li YF, Sui LJ, Zhu B, Liang Y, Liu WD, He CB. Sixteen polymor- phic simple sequence repeat markers from expressed sequence tags of the Chinese mitten crab Eriocheir sinensis. ...
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