G+C content and secondary structure formation vs. sequence
The effects of nucleotide sequence changes on DNA secondary structure formation in Escherichia coli are consistent with cruciform extrusion in vivo.
... There is an initial melting of central base pairs (step l ) , followed by intrastrand pairing and protocruciform formation (step 2), then finally branch migration to the[r] ...
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Prediction Of Antimicrobial Peptides Based On Sequence Alignment And Secondary Structure Sequence And Segment Sequence.pdf
... into secondary structure sequence from the prediction of ...The secondary protein sequences will be used for the AMP feature extraction to form a feature vector and been analyzed for ...
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Galaxy Structure as a Driver of the Star Formation Sequence Slope and Scatter
... When considering star-forming galaxies only, pure expo- nential-disk galaxies exhibit a higher slope of the log SFR log – M relation than those with a signi fi cant bulge component. This result is somewhat dependent on ...
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Star formation along the Hubble sequence Radial structure of the star formation of CALIFA galaxies
... Evidently, this whole field relies on empirical measures of the SFR. There is no shortage of methods of estimating the SFR, each with its virtues and caveats (see Kennicutt & Evans ( 2012 ) for a review). Some gauge ...
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Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA.
... stable structure. It is possible that this conserved sequence is responsible for multiple protein inter- actions mediated through sequence-specific recognition involv- ing either the entire ...
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5.8S rRNA Sequence and Secondary Structure in Parabronema skrjabini and Related Habronematidae Species
... the sequence infor- ...corresponding secondary structures of the transcribed rRNA are highly conserved during evolution (5), perhaps due to the im- portant role of the rRNA folding in holding the structural ...
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Structure formation of geopolymer perlite binder vs type of alkali activating agent
... case, content of alkaline cations in geopolymer system should be minimally required to avoid its carbonatization and exudation in surface layers of the formed solid carbonate ...water content in the binder ...
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Ebola Virus VP30-Mediated Transcription Is Regulated by RNA Secondary Structure Formation
... RNA structure was destroyed, transcription was initiated independently of VP30, indicating that the first step of transcription, namely assembly of the transcription complex at the promoter, is not regulated by ...
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Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE
... either sequence or structure ...visualize sequence and secondary struc- ture ...RNA sequence and secondary structure alignments to a single 2D structure plot of the ...
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From Sequence to Structure
... single sequence can adopt more than one stable structure The existence of chameleon sequences may reflect a general principle: that not all sequences fold into one unique ...in sequence to the normal ...
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Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure
... the sequence using evolutionary information in the form of multiple sequence ...multiple- sequence alignment obtained from PSI-BLAST is used as input instead of a single ...when secondary ...
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Protein secondary structure prediction from amino acid sequence using artificial intelligence technique
... The work of Qian and Sejnowski (1988) sparked the implementation of neural networks in the domain of protein secondary structure prediction. The information theory is a naive statistical method that is ...
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Bioinformatics Study of the Sequence Analysis and Secondary Structure Prediction of Avicennia marina glyoxalase I protein
... of secondary structures have shown that glyoxalase I salt stress plant family consists of higher percentage of α-helix structure as compared to salt sensitive plant glyoxalase ...I secondary ...
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Secondary Structure and Hybridization Accessibility of Hepatitis C Virus 3′-Terminal Sequences
... target sequence based on accessibility mapping and 15-mer ODN-RNase H digestion results, failed to cleave the target ...GC content of the X42 target site, in that hybridization may require formation ...
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Secondary Structure of the 3′ Terminus of Hepatitis C Virus Minus-Strand RNA
... hepatitis C virus (HCV) RNA, the latter being the replicative intermediate, are most likely the initiation sites for replication by the viral RNA- dependent RNA polymerase, ...a secondary-structure ...
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2Statistically significant dependence of the Xaa-Pro peptide bond conformation on secondary structure and amino acid sequence
... that proline in the cis conformation is slightly more fre- quently found in surface accessible areas compared to the trans proline. The reason for the difference can be explained by the find- ing that cis prolines are ...
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Chemistry of Secondary Organic Aerosol Formation
... jor structure in either of these parameters would suggest that additional factors are needed to describe the ...clear structure in both the p = 1 and p = 2 solutions, whereas the p = 3 and p = 4 solutions ...
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G Protein-Coupled Odorant Receptors: from sequence to structure
... Conclusion We have built an alignment of mammalian Odorant Receptor sequences that recapitulates available experimental data obtained by site-directed mutagenesis. More particularly, the debatable alignment of TM5 and ...
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T C T G G C C G A C C T;
... breadth, content should ideally be drawn from each of the areas specified if maximum credit is to be ...the content is drawn from two areas, two marks should be awarded and where it is taken only from a ...
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Profiling vs. Time vs. Content
... Our dataset covers scientific publications in the broader field of economics. Thus, although the dataset is obtained from a portal of economics literature, it contains scientific publications from various fields ...
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