gene order
Evolution of gene order conservation in prokaryotes
... common gene content of the genomes ...common gene content as an additional estimation of distance between genomes, and compared the resulting distances with gene order ...common gene ...
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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
... YGOB provides browsing and analytical access to a robust set of ortholog–ohnolog sets (pillars) from the seven yeast genome se- quences considered here. These pillars have been extensively cu- rated and manually ...
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Super short operations on both gene order and intergenic sizes
... Results and conclusions: In this work, we investigate the problem of computing the distance between two genomes, taking into account both gene order and intergenic sizes. The genome rearrangement operations ...
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Evolutionary Analyses of the Small Subunit of Glutamate Synthase: Gene Order Conservation, Gene Fusions, and Prokaryote-to- Eukaryote Lateral Gene Transfers
... of gene order conservation, including the ...aeolicus. Gene order conservation is rare in distantly related prokaryotes and is very unlikely to indicate ancient organization that was retained ...
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Assessment of gene order computing methods for Alzheimer's disease
... Currently, the mainly proposed therapeutic intervention for AD is anti-amyloid approach, which ranges from inter- dicting amyloidogenic processing of the b -amyloid precur- sor protein (APP) to removing amyloid plaques ...
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Attenuated Infectious Hematopoietic Necrosis Virus with Rearranged Gene Order as Potential Vaccine
... rearranged gene order could be a promising vaccine candidate. Gene arrangement leads to a modification in the transcription gradient of the gene, which could offer interesting levels of ...
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Algorithms for computing the double cut and join distance on both gene order and intergenic sizes
... Background: Combinatorial works on genome rearrangements have so far ignored the influence of intergene sizes, i.e. the number of nucleotides between consecutive genes, although it was recently shown decisive for the ...
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Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser
... Candida Gene Order Browser (CGOB) screenshot for tandem cluster ...a gene and each color a chromosome (horizontal tracks). The gene in focus is highlighted with an orange ...border. ...
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Syntenator: Multiple gene order alignments with a gene-specific scoring function
... multiple gene order alignments between man, mouse, rat and ...multiple gene order alignment is sensitive to the order of alignment ...one gene from each spe- ...multiple ...
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The gene order for rubella virus structural proteins is NH2-C-E2-E1-COOH.
... By employing the widely used method of synchronizing initiation of protein synthesis by treatment of infected cells with hypertonic salt 14 in conjunction with pulse-chase labeling, immu[r] ...
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Gene Order of Encephalomyocarditis Virus as Determined by Studies with Pactamycin
... Furthermore, these stable viral polypeptides are produced in about equimolar amounts 1, supporting the concept that the picornaviral RNA possesses but a single site for the initiation of[r] ...
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Gene Order of the Poliovirus Capsid Proteins
... Then, after a pulse of radioactivity of time t, followed by an instantaneous inhibition with emetine, the number of ribosomes on a single polyribosome passing the 3' end of the VP 1 regi[r] ...
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Evolution of Pulmonate Gastropod Mitochondrial Genomes: Comparisons of Gene Organizations of Euhadra, Cepaea and Albinaria and Implications of Unusual tRNA Secondary Structures
... the chicken mitochondrial genome: a novel gene order in higher vertebrates. University of Washington, Seattle. LECANIUOCT, 1995 Complete sequence and gene organization of [r] ...
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Use of Whole Genome Sequence Data To Infer Baculovirus Phylogeny
... the gene order data points to frequent gene rearrangements in the course of bac- ulovirus ...individual gene phylogenies to the whole genome phylogeny provides further support for horizontal ...
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Comparative genomic identification and validation of ?? defensin genes in the Ovis aries genome
... of gene order conservation with the ovine β-defensin clusters in this study indi- cates common ancestry for these genes, as well as positive selective pressure to maintain these genes through the divergence ...
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Comparative phylogenomics and multi gene cluster analyses of the Citrus Huanglongbing (HLB) associated bacterium Candidatus Liberibacter
... omp gene based phyloge- netic analyses ...omp gene, suggesting future inclusion of these genes along with the 16S rRNA and other omp genes should enhance understanding of ...the order Rhizobiales and ...
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ELECTROPHORETIC VARIATION FOR X CHROMOSOME-LINKED HYPOXANTHINE PHOSPHORIBOSYL TRANSFERASE (HPRT) IN WILD-DERIVED MICE
... The gene order for Hprt, Pgk-2 and Ags has been determined by three-point crosses and agrees with the gene order of centromere-Hprt-Pgk-1-Ags determined by somatic genetic anal[r] ...
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Multiple Barriers to the Evolution of Alternative Gene Orders in a Positive-Strand RNA Virus
... NIb gene (TEV- DNIb) can autonomously infect plants expressing NIb (Li and Carrington 1995), it cannot co-infect wild-type tobacco plants when co-inoculated with a wild-type virus (Tromas et ...essential ...
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In vivo trans-specific gene silencing in fungal cells by in planta expression of a double-stranded RNA
... gus gene silencing in re-trans- formed lines. In order to construct the pC1302GUSi, intron 3 from the malate synthase gene from Arabidopsis thaliana (ms-i3; GenBank accession number AB005235) was ...
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Isolation and Characterization of GDP-L-Galactose Phosphorylase Gene of Vitamin C Biosynthesis Pathway from Kiwi
... GGP gene fragment (1383 bp) was obtained by PCR reaction via specific primers GGPF and GGPR (Figure ...GGP gene showed that this fragment contains 1383 bp and the start and stop codons were ATG and TGA ...
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