GLOBAL GENE-EXPRESSION
Identification of Global Gene Expression Shifts Using Microarray Data from Different Biological Conditions
... their expression and generally, the procedures developed to establish differences between populations using the replicates obtained for each experimental con- dition [4], a global shift comprising the whole ...
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Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer
... the gene expression program in response to heterotypic cell-cell interaction in normal breast and in breast cancer, we examined cells representing the benign and malignant epithelial cell compartment and ...
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Heterogeneity in global gene expression profiles between biopsy specimens taken peri surgically from primary ER positive breast carcinomas
... Two smaller studies have assessed the impact of delay to fixation on global gene expression [4, 5]. In the Borgan study, changes in FOSB and JUND, while percep- tible after 60 minutes, were much ...
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The analysis of global gene expression related to starch, lipid and protein composition
... CACT expression is similar to that of CAC1A, which is consistent with a role in ...CACT expression in seedling (A), shoot meristem (B), plant before bolting (C), rosette after bolting (D), cotyledon (E), ...
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Global Gene Expression Profiling through the Complete Life Cycle of Trypanosoma vivax
... how gene expression is regulated during their ...describe global gene expression throughout the complete ...or expression. While T. vivax conforms to a pattern of highly ...
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Transcriptomic analysis of KSHV-infected primary oral fibroblasts: The role of interferon-induced genes in the latency of oncogenic virus
... The Kaposi sarcoma-associated herpesvirus (KSHV) is the causative agent of Kaposi sarcoma (KS), the most common HIV/AIDS-associated tumor worldwide. Involvement of the oral cavity portends a poor prognosis for patients ...
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Large scale comparison of global gene expression patterns in human and mouse
... conserved expression patterns across species are mostly the ones performing highly tissue-specific functions and are expressed in specific tissues with limited cell ...large-scale gene expression ...
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Irreversible dual inhibitory mode: the novel Btk inhibitor PLS- 123 demonstrates promising anti-tumor activity in human B-cell lymphoma
... [14], global gene expression profiling was needed to carry out to get a more comprehensive insight into alternative anti-tumor mechanisms of this novel Btk ...
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MAPPFinder: using Gene Ontology and GenMAPP to create a global gene expression profile from microarray data
... After MAPPFinder assigns the genes in the microarray dataset to the GO structure, it calculates for each GO term the percentage and z score (see Materials and methods) for the genes that meet the user’s criterion. These ...
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Single cell dissection of early kidney development: multilineage priming
... distinct gene expression patterns of these cells (Mugford et ...their global gene expression profiles could result in deeper ...polarized gene expression of the renal ...
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Gene expression profiling signatures for the diagnosis and prevention of oral cavity carcinogenesis-genome-wide analysis using RNA-seq technology
... in global gene expression between an early stage (the termination of the carcinogen treatment and prior to the appearance of frank tumors) and a late stage (frank squamous cell carcinoma (SCC)) of ...
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Multiparameter Analysis of Human Bone Marrow Stromal Cells Identifies Distinct Immunomodulatory and Differentiation-Competent Subtypes
... performed global gene expression analyses to identify distinguishing characteristics between the hTERT-BMSC clones and parental BMSCs; selecting significantly differen- tially expressed genes (p < ...
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Interferon Regulatory Factor 3 Is Necessary for Induction of Antiviral Genes during Human Cytomegalovirus Infection
... To address this question, we performed a “loss-of-function” forward genetics approach using small interfering RNA (siRNA) directed against IRF3 and subsequently monitoring ISG induction by HCMV. Primary human foreskin ...
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Dynamic Gene Regulatory Networks Drive Hematopoietic Specification and Differentiation
... the expression of pluripotency genes and re- presses mesendodermal genes, whereby repression can be overcome by the activation of BMP and Wnt signaling (Beyer et ...The expression of all TEADs as well as ...
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A systems biology analysis of feedback control in pheromone signalling of fission yeast
... The measurements from qPCR are usually made on a relative scale, where the changes in gene expression are expressed as fold differences with respect to a sam- ple that is chosen as the unit calibrator. To ...
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Chromosome wide evolution and sex determination in the three sexed nematode auanema rhodensis
... the gene density and localisation of genes with orthologues in Drosophila melanogaster across chromosomes was uniform (Figure ...lower gene density than the autosomes (one protein-coding gene per ...
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Microbial Risk Indicators of Early Childhood Caries
... for gene expression analysis (9) was adapted to the checkerboard technology (11) to permit simul- taneous analysis of the abundance of significant species by allowing cross-bacterial comparisons of ...
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The Barley Microarray A Community Vision and Application to Abiotic Stress
... dehydrin gene family (C��� et ...the expression of each gene ...resistance gene analogues and all other multigene ...of gene-specificity prompted Roger Wise to explore options to have ...
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Epithelial and stromal-specific immune pathway activation in the murine endometrium post-coitum.
... Relative CSF mRNA expression in murine endometrial epithelial and stromal cells post coitum. (both transcript variants) varied little in the epithelium, while peaking on day 1 and 4 in the stroma. exhibited ...
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Simian Virus 40 T-Antigen-Mediated Gene Regulation in Enterocytes Is Controlled Primarily by the Rb-E2F Pathway
... the expression of a large collection of cellular genes that are E2F ...the expression of p53-dependent genes that arrest cell cycle progression and induce ...
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