Hairpin structure
Functional Implications of the Human T-Lymphotropic Virus Type 1 Transmembrane Glycoprotein Helical Hairpin Structure
... gp21 hairpin, whereas aggregation indicated ...helical hairpin structure, perhaps by functioning as a flexible hinge to facilitate the conversion of prefusogenic Env to the fusion- active ...
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Comparison of Predicted Scaffold-Compatible Sequence Variation in the Triple-Hairpin Structure of Human Immunodeficiency Virus Type 1 gp41 with Patient Data
... reference structure and the global energy of the point-mutated ...reference structure) is characterized by a zero ECO ...the hairpin units, the structure of e-gp41 is systematically ...
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Discontinuous Subgenomic RNA Synthesis in Arteriviruses Is Guided by an RNA Hairpin Structure Located in the Genomic Leader Region
... a hairpin structure that functions in sg mRNA ...TRS hairpin (LTH) and its immediate flanking sequences are essential for efficient sg RNA synthesis and form an independent functional entity that ...
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Effects of Adeno-Associated Virus DNA Hairpin Structure on Recombination
... The hairpin struc- tures present on the ends of the adeno-associated virus (AAV) genome are substrates for recombination that give rise to persistent circular and concatemeric DNA episomes through intramolecular ...
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Stable hairpin structure within the 5'-terminal 85 nucleotides of poliovirus RNA.
... Our procedure cannot be applied to a study of the 5' end of poliovirus 328 Downloaded from http://jvi.asm.org/ on November 10, 2019 by guest The primary sequence of a 5'-terminal fragmen[r] ...
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On the generation of the MSD Ѱ class of defective HIV proviruses
... With this mechanistic background, it can easily be understood that inactivation of MSD by mutation or dele- tion can trigger an effective shutdown of HIV transcrip- tion through activation of the 5ʹ pA site. Thus, it ...
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RNA Editing in Hepatitis Delta Virus Genotype III Requires a Branched Double-Hairpin RNA Structure
... double-hairpin structure, the entire SL1 is very highly conserved; among the six isolates there are only three changes in these 69 ...the structure from being too ...
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Synthesis of small gold nanorods and their subsequent functionalization with hairpin single stranded DNA
... a hairpin structure, and the in fl uence of the hairpin structure and packing density on the performance of ...ssDNA hairpin contains a sequence complementary to the target ...the ...
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Augmentation of structural stability in model peptide systems through redesign and post-translational modifications
... stable structure in Trpswitch. The hairpin structure can be destabilized upon the incorporation phosphoserine which is similar to lose of binding of HP 1 to Histone 3 when a specific serine residue ...
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4783.pdf
... The circular dichroism spectrum of HB-aF-U displayed a minimum at 215 nm indicative of global β-hairpin formation (Figure 5.3). Upon completion of the click cyclization a minimum of 215 nm was no longer observed, ...
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Evolution of the human immunodeficiency virus type 2 envelope in the first years of infection is associated with the dynamics of the neutralizing antibody response
... Results: CD4 + T cells decreased from about 50% to below 30% in both children in the first five years of infection and the infecting R5 viruses were replaced by X4 viruses within the same period. With antiretroviral ...
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Production of copolyesters of 3-hydroxybutyrate and medium-chain-length 3-hydroxyalkanoates by E. coli containing an optimized PHA synthase gene
... A hairpin structure which was reported to be able to increase mRNA sta- bility [29] was introduced in the 5’ UTR of the mRNA for the target ...the hairpin region [Gen- Bank: JX082171] was synthesized ...
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In silico identification and target prediction of micrornas in Sesame (sesamum indicum L.) expressed sequence tags
... its structure can be used as a search ...stem-loop structure or a hairpin structure, with continuous helical pairing and a few internal ...secondary structure proved to be the most ...
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Nucleotide sequence of the self-priming 3' terminus of the single-stranded DNA extracted from the parvovirus Kilham rat virus.
... This analysis has given us confirmation of a 3'-terminal hairpin structure, a proposed model for the secondary structure of the terminus, and the nucleotide sequence of the DNA which at [r] ...
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Spurious Response Suppression in Hairpin Filter Using CSRR Merged in the Filter Structure
... microstrip hairpin filters based on complementary split-ring resonators (CSRRs) ...in hairpin structure with no increase in used area while improving the filter response with harmonic rejection ...
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Destabilization of the TAR hairpin leads to extension of the polyA hairpin and inhibition of HIV 1 polyadenylation
... DIS hairpin that mediates RNA dimerization is more exposed, which affects dimerization [35] and packaging of the transcripts into virion particles (unpublished ...
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The 3′ Untranslated Region of Pea Enation Mosaic Virus Contains Two T-Shaped, Ribosome-Binding, Cap-Independent Translation Enhancers
... a hairpin in this ...the structure of the 3=UTR of PEMV within full-length ...the structure of the 3= terminal region only, 214 additional plasmid-derived nucleotides were present at the 3= end of ...
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Opening of the TAR hairpin in the HIV 1 genome causes aberrant RNA dimerization and packaging
... TAR hairpin in HIV replication, we generated HIV-rtTA variants in which the left or the right side of the TAR stem was partially deleted (A and B mutants in Figure 1B, ...[30]. Structure probing of in vitro ...
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Stabilization of TM Trimer Interactions during Activation of Moloney Murine Leukemia Virus Env
... The transmembrane subunit (TM) of the trimeric retrovirus Env complex is thought to direct virus-cell membrane fusion by refolding into a cell membrane-interacting, extended form that subsequently folds back on itself ...
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Human immunodeficiency virus rev protein recognizes a target sequence in rev-responsive element RNA within the context of RNA secondary structure.
... RREDDE folded into a structure similar to that of a biologically active mutant that had lost the 3' stem-loops C, D, and E 15, 28, 33 except for a modified stem A, consisting of hairpin [r] ...
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