Identification of single nucleotide polymorphisms
Effect of population stratification on the identification of significant single nucleotide polymorphisms in genome wide association studies
... BMC Proceedings Proceedings Effect of population stratification on the identification of significant single nucleotide polymorphisms in genome wide association studies Sara M Sarasua1,2, Julianne S Co[.] ...
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IN SILICO IDENTIFICATION OF POTENTIAL DRUG TARGET AND ANALYSIS OF EFFECTIVE SINGLE NUCLEOTIDE POLYMORPHISMS FOR OVARIAN AND BREAST CARCINOMAS
... target identification process this study gone through the collection of single nucleotide polymorphisms (SNPs) of related target genes to isolate the most deleterious or highly risk SNP, ...
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Identification of Single Nucleotide Polymorphisms on Cattle Breeds in Indonesia Using Bovine 50k
... Twenty eight "Ongole Grade" (OG) beef cattle and 20 "Holstein Friesian" (HF) dairy cattle were used for the Infinium II assay test. This assay included amplification of genomic DNA, fragmenta- tion, ...
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Identification of single nucleotide polymorphisms in GDF9 gene associated with litter size in Garut sheep
... prolificacy; single nucleotide polymorphism (SNP) ...the identification of major genes related to re- productive traits that can be further utilized as a marker- assisted selection in sheep ...
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Bovine leukemia virus long terminal repeat variability: identification of single nucleotide polymorphisms in regulatory sequences
... Methods: Overlap extension PCR, sequencing and Bayesian phylogenetic reconstruction of LTR sequences were performed. These analyses were followed by detailed sequence comparison, estimation of genetic heterogeneity and ...
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Identification of single nucleotide polymorphisms of PIK3R1 and DUSP1 genes and their genetic associations with milk production traits in dairy cows
... The single-locus and haplotype-based association analyses in the first and sec- ond lactations for milk production traits were performed using the mixed procedure of SAS ...
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Identification of single nucleotide polymorphisms in the bovine Toll-like receptor 1 gene and association with health traits in cattle
... of polymorphisms within TLR- related or target genes such as TLR2 and CXCL8 should be ...a single gene indicates the importance of boTLR1 related responses in the control of bacterial dis- ease in ...
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Identification of functional single nucleotide polymorphisms in the branchpoint site
... 4 Nucleotide sequences of KLC3 intron 12 and alternative splicing forms in minigene-transected 293T ...a Nucleotide sequences at 3 ′ part of the KLC3 intron ...
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Genome-wide identification and analysis of miRNA-related single nucleotide polymorphisms (SNPs) in rice
... Qingpo Liu 1* , Hong Wang 1 † , Leyi Zhu 1 † , Haichao Hu 1 † and Yuqiang Sun 2* Abstract Background: MiRNAs are key regulators in the miRNA-mediated regulatory networks. Single nucleotide ...
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Identification of diagnostic mitochondrial DNA single nucleotide polymorphisms specific to Sumatran Orangutan (Pongo abelii) populations
... Abstract: The hypervariable region I of mitochondrial DNA has frequently been used to distinguish among populations, in particular in species with strong female philopatry. In such cases, populations are expected to ...
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Identification and Analysis of Informative Single Nucleotide Polymorphisms in 16S rRNA Gene Sequences of the Bacillus cereus Group
... National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA a ; Science and Technology Directorate, U.S. Department of Homeland Security, Washington, ...
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Identification and genotyping of feline infectious peritonitis-associated single nucleotide polymorphisms in the feline interferon-γ gene
... a single genotyping microarray will allow the selection of resistant cats before breeding and eventually decrease the morbidity of the cat population to ...
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Virulence Phenotypes of Rotylenchulus reniformis: Evaluation of Host Status of Cotton and Utility of Single Nucleotide Polymorphisms (SNPs) for Identification
... Figure 3. Effect of four isolates of Rotylenchulus reniformis on plant dry weight of cotton genotypes Phytogen 499 WRF (PHY499), Deltapine 1133 B2RF (DP1133), Phytogen 333 WRF (PHY333), Stoneville 4946 GLB2 (ST4946), ...
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Single nucleotide polymorphisms and disease gene mapping
... any single polymorphism in the region where multiple vari- ants contribute identical genetic ...the identification of disease-associated regions, it makes the characterization of disease mutations or ...
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Single nucleotide polymorphisms (SNPs) in occupational exposure assessment
... The identification of gene-environment interactions as exposure is more prevalent and assessed with greater accuracy than in population or hospital-based case-control studies in ...
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Lecture 6: Single nucleotide polymorphisms (SNPs) and Restriction Fragment Length Polymorphisms (RFLPs)
... of identification and cloning of genes responsible for inherited human diseases are presented below, each of which employed a somewhat different experimental ...
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Using single nucleotide polymorphisms as a means to understanding the pathophysiology of asthma
... the identification of a chromosomal region that is transmitted within families along with the disease phenotype of ...the identification of genes responsible for diseases with simple Mendelian inheritance, ...
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Single Nucleotide Polymorphisms on the Road to Strain Differentiation in Mycobacterium ulcerans
... Within the M. tuberculosis complex, and even within M. ulcerans-related mycolactone-producing mycobacteria, analysis of LSPs represents a valuable approach for genetic fingerprint- ing (5, 6, 12, 18). However, with the ...
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Prioritizing single-nucleotide polymorphisms and variants associated with clinical mastitis
... histone marks, H3k4Me signals, and methylation events can distinguish prospects for high-throughput identification of putative enhancers to complement experimental approaches. 36 Recently, Functional Annotation of ...
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Studies on the relationship between single nucleotide polymorphisms and protein interactions
... 2.3 Identification of SNPs The SNP database was downloaded from the UniProt humsavar (Wu et ...a single nsSNP, the position or the substitution may differ between different ...
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