ingenuity pathway analysis
Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis
... ''Core Analysis' function included in IPA (Ingenuity System Inc, USA) [4] was used to interpret the chicken data in the context of biological processes, pathways and ...the analysis. After the ...
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SNHG15 is a bifunctional MYC-regulated noncoding locus encoding a lncRNA that promotes cell proliferation, invasion and drug resistance in colorectal cancer by interacting with AIF
... expression analysis by RNA-seq was performed in LoVo cells after transfection with combination of two siRNAs or a negative control ...function, Ingenuity Pathway Analysis (IPA) was performed, ...
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Cytotoxicity, anti-angiogenic, apoptotic effects and transcript profiling of a naturally occurring naphthyl butenone, guieranone A
... arrest. Ingenuity Pathway Analysis identified several pathways in CCRF-CEM cells and functional group of genes regulated upon GA treatment (P < ...
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Death Receptor-Mediated Apoptotic Signaling Is Activated in the Brain following Infection with West Nile Virus in the Absence of a Peripheral Immune Response
... cal analysis, two preprocessing steps involving normalization and gene filtering were ...using Ingenuity Pathway Analysis (IPA) software (Ingenuity Systems, Redwood City, ...The ...
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Study of phosphorylation events for cancer diagnoses and treatment
... (Ingenuity Pathway Analysis ...metaCore pathway analysis ...systematic analysis of protein phos- phorylation networks from phosphoproteomics data; ...
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Mesenchymal cell interaction with ovarian cancer cells induces a background dependent pro metastatic transcriptomic profile
... using Ingenuity pathway analysis we demonstrate that genes related to cellular ad- herence, invasion, migration, proliferation and chemore- sistance are modified upon OCC/MSC contact in a cell line ...
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Loss of HSulf-1 promotes altered lipid metabolism in ovarian cancer
... bioinformatics analysis of the KEGG pathway of the metabolites, the ingenuity pathway analysis of the microarray data and provided the following figures: Figure 1B,D, Additional file 3: ...
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Altered transcriptome signature of phenotypically normal skin fibroblasts heterozygous for CDKN2A in familial melanoma: relevance to early intervention
... (Significance Analysis of Microarray) was used to detect probes that demonstrate differential expression among the different subsets of samples (Group 1, 2 and 3_untreated, n=3; Group 1, 2 and 3_UV irradiated, ...
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Microarray profile of human kidney from diabetes, renal cell carcinoma and renal cell carcinoma with diabetes
... The Ingenuity Pathway Analysis (IPA) generated to show the Networks and Functional Analysis of INSR using shared copy number variations between diabetes and RCC+diabetes groups also suggest ...
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Genomic Analysis Reveals Pre- and Postchallenge Differences in a Rhesus Macaque AIDS Vaccine Trial: Insights into Mechanisms of Vaccine Efficacy
... functional analysis of ...the Ingenuity Pathway Analysis program, using the genes from the differential functional analysis shown in ...
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Whole blood expression profiling from the TREAT trial: insights for the pathogenesis of polyarticular juvenile idiopathic arthritis
... the Ingenuity Pathway Analysis (IPA) software (Ingenuity Systems®, Redwood City, CA, USA; IPA Summer Release, June, 2015) for network analysis, with differentially expressed (DE) genes ...
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A novel chemical screening strategy in zebrafish identifies common pathways in embryogenesis and rhabdomyosarcoma development
... embryos subjected to heat shock. Both groups of embryos received heat shock at 37°C for 1 hour at 24 hpf, and were kept at 28.5°C until 30 hpf for RNA extraction. Three different fold change cut- offs were utilized in ...
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Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsia
... an Ingenuity Pathway Analysis (IPA) on the genes with significant DM at TSS200 to identify pathways and networks that were altered in EOPE (Figure 5A, C, D, Tables 2 and ...
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Time-dependent network analysis reveals molecular targets underlying the development of diet-induced obesity and non-alcoholic steatohepatitis
... network analysis identified previously (Do et ...network analysis is illustrated in ...used Ingenuity pathway analysis (IngenuityÒ Systems, ...and pathway interactions between ...
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Prepartum dietary energy intake alters adipose tissue transcriptome profiles during the periparturient period in Holstein dairy cows
... Methods: Fourteen primiparous Holstein cows from a larger cohort receiving a higher-energy diet (1.62 Mcal of net energy for lactation/kg of dry matter; 15% crude protein) for ad libitum intake to supply 150% (OVR) or ...
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SIRT6, a novel direct transcriptional target of FoxO3a, mediates colon cancer therapy
... and Ingenuity Pathway Analysis (IPA), our previous studies show that except for PUMA [8-10], SIRT6 is another pro-apoptotic protein that decreased a lot in colon cancer (data not ...
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Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota
... FIG 1 Study overview. (A) Terminal ilea from conventional and GF mice were quantitatively compared to produce the ⬙ ileum data set. ⬙ Transcriptomics was used with DNA microarrays to produce the ⬙ transcriptome data ...
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miRNA expression profiling in formalin-fixed paraffin-embedded endometriosis and ovarian cancer samples
... program Ingenuity Pathway Analysis (IPA), leading to summarization of their biological significance and to defin- ing the molecular interaction between altered miRNAs and their related target gene ...
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Identification of mTOR inhibitor-resistant genes in cutaneous squamous cell carcinoma
... Materials and methods: The identification of cell viability according to concentration of everolimus and Western blot was done. To analyze the global gene expression profiles, A431 and HSC-1 cells were treated with ...
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Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares
... statistical analysis to identify enriched Gene Ontology categories for the input gene sets and generates a GOTree, a tree-like structure to navigate the Gene Ontol- ogy Directed Acyclic Graph to help users ...
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