A N OVERVIEW OF THE TRANSCRIPTOMICS AND PROTEOMICS DATA
Plant Aquaporins: Genome-Wide Identification, Transcriptomics, Proteomics, and Advanced Analytical Tools
... Rupesh K. Deshmukh † , Humira Sonah † and Richard R. Bélanger * Département de Phytologie–Faculté des Sciences de l’Agriculture et de l’Alimentation, Université Laval, Québec, QC, Canada Aquaporins (AQPs) are ...
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Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis
... expression data in human primary chondrocytes, we identified consistent molecular players in OA progression that replicated across independent datasets and that have translational ...
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Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease
... the proteomics results (Additional file 6: Table S6) strongly support the involvement of mitochondrial-related pathways, as has been previously suggested [10, 38, 39], justifying renewed attention to this area of ...
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Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study
... The proteomics data from larger samples experimentally validated approximately half of these probable targets in this ...to transcriptomics data, more than 80% of targets are highly likely to ...
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Epigenetics and Proteomics Join Transcriptomics in the Quest for Tuberculosis Biomarkers
... and proteomics) in the quest to (i) understand the biology of the TB host response and (ii) search for multi- platform biosignatures in ...our data argue for the development of a large-scale study of the ...
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From marine venoms to drugs: efficiently supported by a combination of transcriptomics and proteomics
... synthesis, data opening and exchange, and collaborations between research groups, are all crucial for the successful development of marine toxins as drug ...of transcriptomics and proteomics, the ...
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Transcriptomics and proteomics analysis to identify molecular mechanisms associated with meat quality traits
... and proteomics analysis to identify molecular mechanisms associated with meat quality traits Boar taint and water holding capacity (WHC) are important quality criteria in pig production and affect the financial ...
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The Open2Dprot Proteomics Project for n-dimensional Protein Expression Data Analysis
... integrated proteomics expression databases and bioinformatic tools that help perform exploratory data analysis and data mining in the context of the large number of high-quality characterization, ...
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Integrated nuclear proteomics and transcriptomics identifies S100A4 as a therapeutic target in acute myeloid leukemia
... Whilst S100A4 has been widely studied in solid tumors very little is known of its role in hematological malig- nancies. We show for the first time that normal CD34 + cells and myeloid differentiated lineages express this ...
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The Influence of Preovulatory Estradiol on Uterine Transcriptomics and Proteomics Around Maternal Recognition of Pregnancy in Beef Cattle
... tissue. There were 170 proteins that were differentially expressed in the tissue types. Sixty of these proteins were upregulated in caruncular regions, while 110 were upregulated in intercaruncular regions. The protein ...
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Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL mediated apoptosis
... previously collected lung and kidney tissue samples from HeV-infected bats, we examined the expression of TRAIL and CD40 mRNA in the context of an in vivo infection. While no increase in CD40 mRNA expression was ob- ...
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Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets
... the proteomics and transcriptomics ...by proteomics we found that the ma- jority of corresponding transcript where more highly expressed in head versus body tissue (Additional file ...
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Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach
... microarray data sets, mainly implicating bacterial ...Comparative proteomics of 616 versus 701 revealed a differential abundance of proteins in various functional categories, including cell wall-associated ...
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Proteomics and transcriptomics of broccoli subjected to exogenously supplied and transgenic senescence-induced cytokinin for amelioration of postharvest yellowing
... I N F O A B S T R A C T Available online 23 May 2013 Previously, we investigated transgenic broccoli harboring senescence-associated-gene (SAG) promoter-triggered isopentenyltransferase (ipt), which encodes the ...
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Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: novel responses and implications for strain improvement
... A transcriptomics and proteomics approach was employed to study the expression changes associated with p-hydroxybenzoate production by the engineered Pseudo- monas putida strain ...
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Transcriptomics and proteomics analyses of the PACAP38 influenced ischemic brain in permanent middle cerebral artery occlusion model mice
... Glycosylation Insulin Signaling Pathway Mitochondrial Energy Metabolism Skeletal Muscle: Myogenesis & Myopathy Huntington's Disease Neurogenesis and Neural Stem Cells Neuroscience Ion Channels & Transporters ...
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Novel pattern recognition approaches for transcriptomics data analysis
... for transcriptomics and genomics data analysis based on multi-level thresholding approach, such as OMTG for sub-grid and spot detection in DNA microarrays, and OMT for detecting significant regions based on ...
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BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
... Implementation We envision BioWardrobe being installed on a dedicated server by an IT professional at a laboratory or core facility level and accessible to users via web interface using Google Chrome, Safari and Firefox ...
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Novel pattern recognition approaches for transcriptomics data analysis
... for transcriptomics and genomics data analysis based on multi-level thresholding approach, such as OMTG for sub-grid and spot detection in DNA microarrays, and OMT for detecting significant regions based on ...
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Challenges and Opportunities in Proteomics Data Analysis*
... concrete plan to merge the mzXML and mzDATA formats into a single unified file format is encouraging. PEPTIDE IDENTIFICATION AND VALIDATION The second main step consists of the assignment of MS/MS spectra to peptide ...
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