Nucleotide sequence recording and data generation
Unlabeled Data for Morphological Generation With Character Based Sequence to Sequence Models
... The resulting accuracies for Arabic and Ger- man can be seen in Figure 2. The other languages behave similarly to German. The loss of perfor- mance for reducing the training data varies a lot between languages, ...
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Empirical Bayes Estimation of Coalescence Times from Nucleotide Sequence Data
... ABSTRACT We demonstrate the advantages of using information at many unlinked loci to better calibrate estimates of the time to the most recent common ancestor (TMRCA) at a given locus. To this end, we apply a simple ...
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Complete Nucleotide Sequence of Polyomavirus SA12
... SA12 encodes microRNAs. Like SV40, we have found that SA12 encodes microRNAs. The SA12 miRNAs share a re- markable degree of similarity with the SV40 miRNAs. First, the miRNAs derived from both viruses are complementary ...
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The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data
... FUTURE DEVELOPMENTS The motivation behind the creation of otu2ot is twofold. First, it provides a more transparent, single-language imple- mentation of the scripts used for oligotyping and MED, in order to promote more ...
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A Complete Generic Phylogeny of Malpighiaceae Inferred from Nucleotide Sequence Data and Morphology
... Future directions — The analyses reported here have done a great deal to resolve infrafamilial relationships in the Malpighi- aceae, but as described above, there remains a need for better resolution in several parts of ...
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RETRIEVING SEQUENCE INFORMATION. Nucleotide sequence databases. Database search. Sequence alignment and comparison
... Ensemble A nice feature is customizable home page that keeps track of your searches even if done from different computers. Ensemble has many tools for extracting and downloading user- specific aspects of the data ...
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Nucleotide sequence and genome organization of canine parvovirus.
... Partial sequence data and restriction mapping confirmed that about 400 to 500 nt had been duplicated in the 5' untranslated region starting 51 base pairs (bp) from the HaeIII site (mp 94[r] ...
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Joint analysis of sequence data and single nucleotide polymorphism data using pedigree information for imputation and recombination inference
... First, data quality, including missing and gen- otyping errors, can have a substantial effect on the final ...from sequence data will improve, which in turn will improve our imputation results ...
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Frequentist Estimation of Coalescence Times From Nucleotide Sequence Data Using a Tree-Based Partition
... of data, our estimator, which Thus, a slightly underestimated mtDNA mutation rate requires no knowledge of the population model, achieves can account for the ...
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Relationships of the heteronchocleidids (heteronchocleidus, eutrianchoratus and trianchoratus) as inferred from ribosomal DNA nucleotide sequence data
... The need for more taxa data versus more characters have been well debated by Hillis et al. (2003). Resolving the anabantoid and channid relationships and heteronchocleidids distribution. – The close relationships ...
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CoverView: a sequence quality evaluation tool for next generation sequencing data.
... The Regions View provides region-level metrics values for PMS2 exon 12 (Figure 2). The table shows that 3404 reads were mapped to this region. Although the least covered base has 173 reads (MINCOV=173), one part of the ...
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Determination and analysis of the complete nucleotide sequence of human herpesvirus.
... the data presented in this report demonstrate a close genetic relationship between HHV-6 and HHV-7 and have delineated specific, localized regions of divergence be- tween these two ...
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SSE: a nucleotide and amino acid sequence analysis platform
... The program uses simple ASCII coding for storage of sequence and annotation data in its native format with 4 bit coding for the four bases and each ambiguity code. Alignment and file size is restricted to ...
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NUCLEOTIDE SEQUENCE HOMOLOGY WITHIN THE GENOME OF DROSOPHILA MELANOGASTER
... The data presented here for Dro- sophila DNA show that a t high temperatures and with limited reactions, duplexes are formed with a mean stability of 78"C, about 4°C[r] ...
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A Survey of Chromosomal and Nucleotide Sequence Variation in Drosophila miranda
... less nucleotide sequence variation, and the effective population size of this species is inferred to be several-fold ...However, data on an additional region of period confirm population subdivision ...
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The nucleotide sequence and genome organization of Plasmopara halstedii virus
... partial nucleotide sequence confirmed the uniformity of the virions found in ...genomic data. Here we report on the complete nucleotide sequence and genome organization of PhV and its ...
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Neural AMR: Sequence to Sequence Models for Parsing and Generation
... Abstract Sequence-to-sequence models have shown strong performance across a broad range of ...labeled data and the non- sequential nature of the AMR ...AMR generation, our model establishes a ...
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MARINE CASUALTIES DATA RECORDING
... VTS area tugs assisting vessel, number, type & where fastened If more than one ships are involved in the same accident, then a separate form should be filled for each ship. If more than one casualties are involved, one ...
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Handling next generation sequence data
... Wish list for Life Sciences Grid related to sequence analysis. Public databases GenBank[r] ...
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Nucleotide sequence of bacteriophage f1 DNA.
... (a) Plus-strand sequence obtained through the Pol 1-catalyzed extension of AluI-BlHha on the isolated minus strand of HgaI-C as the template; (b and c) minus-strand sequence obtained thr[r] ...
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