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Outbreak summary and workflow for sequence analysis

Development of workflow for picornavirus genome sequence analysis

Development of workflow for picornavirus genome sequence analysis

... a sequence similarity search. It compares the sequence of interest to sequence databases and calculates the statistical significance of the resultant ...for sequence data and related ...

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Development of a Workflow to Detect Sequence Variants in the BRCA1 and BRCA2 Genes

Development of a Workflow to Detect Sequence Variants in the BRCA1 and BRCA2 Genes

... Following sequence analysis by both teams, the mutations observed using the Applied Biosystems ® 3730xl Genetic Analyzer were found to be identical to the results obtained by Applied Biosystems scientists ...

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Service Oriented Architecture for Biosequence Analysis Workflow

Service Oriented Architecture for Biosequence Analysis Workflow

... in sequence analysis and a service-based portal system to abstract the intricacies of managing interactions with underlying high-performance computing machines are being ...

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Genomics and outbreak investigation: from sequence to consequence

Genomics and outbreak investigation: from sequence to consequence

... Analysis and hypothesis testing During this stage, there is often a series of iterative refinements to assumptions and models. For example, in a detailed retrospective analysis of tuberculosis cases in the ...

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ROUNDTABLE 2021 EBOLA OUTBREAK IN GUINEA SUMMARY CONSIDERATIONS

ROUNDTABLE 2021 EBOLA OUTBREAK IN GUINEA SUMMARY CONSIDERATIONS

... Ebola outbreak in Guinea and preparedness activities in neighbouring countries, regarding a brief, tools, additional technical expertise or remote analysis, or should you like to be considered for the ...

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Resolution of a Meningococcal Disease Outbreak from Whole Genome Sequence Data with Rapid Web Based Analysis Methods

Resolution of a Meningococcal Disease Outbreak from Whole Genome Sequence Data with Rapid Web Based Analysis Methods

... locus-by-locus analysis approach enables the rapid interpretation of the resultant data to resolve a range of clinical and epidemiological ...the analysis of large numbers of ...

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Summary of the National Center for Genome Analysis Support (NCGAS) 2018 de Novo Transcriptome Workflow and Workshop

Summary of the National Center for Genome Analysis Support (NCGAS) 2018 de Novo Transcriptome Workflow and Workshop

... Genome Analysis Support (NCGAS) held a workshop entitled "de novo Assembly of Transcriptomes using HPC Resources" on April 30th, 2018 through May 1, ...approachable workflow for our ...

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A Fast, Accurate, and Automated Workflow for Multi Locus Sequence Typing of Bacterial Isolates

A Fast, Accurate, and Automated Workflow for Multi Locus Sequence Typing of Bacterial Isolates

... integrated workflow significantly reduces the time required to analyze and type unknown microbial ...Data analysis in the current MLST workflow requires 4–5 hours of post-analysis data ...

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A workflow to support forensic database analysis

A workflow to support forensic database analysis

... 2.5.1 Summary The data breaches trend in the last decade clearly shows that organisations are not taking their information security goals of confidentiality, integrity and availability very ...

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EXECUTIVE SUMMARY: Utility Geographic Information Systems GIS Tools and Workflow Applications for AEC and Operations: Market Analysis and Forecasts

EXECUTIVE SUMMARY: Utility Geographic Information Systems GIS Tools and Workflow Applications for AEC and Operations: Market Analysis and Forecasts

... Additional analysis includes secondary research conducted by Pike Research’s analysts and the firm’s staff of research ...quantitative analysis presented in Pike Research’s ...all analysis is ...

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The Public Inquiry into the September 2005 Outbreak of E.coli O157 in South Wales. Summary

The Public Inquiry into the September 2005 Outbreak of E.coli O157 in South Wales. Summary

... 12. Abattoirs must take steps to prevent an animal’s flesh becoming contaminated with E.coli O157 in the first place. The organism is killed by cooking so action to prevent the cross- contamination of ready-to-eat foods ...

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In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): Comparison of the automated ESTExplorer workflow platform with conventional database searches

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): Comparison of the automated ESTExplorer workflow platform with conventional database searches

... A detailed comparison of all of the categories is given in Additional File 5. In addition, as users can modify the E- value thresholds and the overlap (percent identity) cut- offs during the assembly of ESTs in ...

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A Generalized Email Classification System for Workflow Analysis

A Generalized Email Classification System for Workflow Analysis

... Another interesting topic is email grouping and summarization. Ayodele, Zhou, and Khusainov [14] present the design and implementation of an application to categorize and summarize email content. Their system extracts ...

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A Boosted Segmentation Method for Surgical Workflow Analysis

A Boosted Segmentation Method for Surgical Workflow Analysis

... 2.3 Weighting Method The instruments occurring within a phase vary and are generally not sufficient to characterize the phase, as the temporal sequence of actions often plays a decisive role. But the instruments ...

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A Workflow Analysis Perspective to Scholarly Research Tasks

A Workflow Analysis Perspective to Scholarly Research Tasks

... 6.2 Implications for system design and evaluation From a micro-level perspective to analyze scholarly workflows, as proposed in this paper, one of the challenges of research infrastruc- ture projects is to develop ...

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Workflow Design and Analysis

Workflow Design and Analysis

... and Analysis This course addresses the understanding of workflow and uses of information in business ...process analysis; process representation; interpreting and creating process diagrams; and ...

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Process/Workflow Analysis Quiz

Process/Workflow Analysis Quiz

... B: defines the purpose of the system, explores present forms and methods and exposes all of the costs associated with the present system C: analysis of existing workflows and future methods of streamlining work ...

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Workflow and Process Analysis for CCC

Workflow and Process Analysis for CCC

... 2. Orient team members on the purpose of mapping current workflow and processes, and the ultimate goal of improvement in light of the CCC program that is being adopted. Individuals need reinforcement that this is ...

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Workflow Analysis - A Clinic Practice

Workflow Analysis - A Clinic Practice

... the lens of” analysis, providing views from multiple perspectives: technology, information flow, the patient experience, and so on. 2 It is important to remember that with process mapping (as with documenting ...

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miRNA data analysis workflow

miRNA data analysis workflow

... functional analysis of miRNA data tends to have a bias towards certain pathways and this bias is seen even with random lists of miRNAs (Bleazard, Lamb, and Griffiths-Jones 2015; Godard and Van Eyll ...functional ...

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