Pipeline for mutant identification using SHOREmapping
Identification of pneumonia and influenza deaths using the death certificate pipeline
... Analysis of failures For the 472 pneumonia and influenza cases found by the reference standard, DCP correctly identified 471 cases, missed one case and incorrectly flagged nine cases. Most failures were due to ...
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CloudMap: A Cloud-Based Pipeline for Analysis of Mutant Genome Sequences
... Acknowledgments We thank members of the Hobert lab, many colleagues in the Caenorhabditis elegans community for reading and com- menting on the manuscript, and Alexander Boyanov for his expert handling of our WGS ...
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Identification of a Maize Locus That Modulates the Hypersensitive Defense Response, Using Mutant-Assisted Gene Identification and Characterization
... called Mutant- Assisted Gene Identification and Characterization is used to identify naturally occurring loci modulat- ing the hypersensitive defense response (HR) in ...maize. Mutant-Assisted Gene ...
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Identification of KIT as a Suppressor of BRAFV600E-Mutant Melanoma
... melanocytes/embryo ± standard deviation in the dorsal head region, respectively. This degree of change yields a cohen’s d effect size of 2.65 that would yield a statistical power of 0.89 in a two-tailed test with a ...
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Omics biomarker identification pipeline for translational medicine
... Data quality module The data quality module consists of different checks on both features and samples to exclude or data based on the amount of missingness, and to standardize data to make measurements of features in ...
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Cancer subtype identification pipeline: a classifusion approach
... 2) Fuzzy membership value dataset: Soria et al. [2] used the FuzzyQSBA method together with a class assignment algorithm to classify the breast cancer patients in one of the seven breast cancer classes. The algorithm was ...
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Cancer subtype identification pipeline: a classifusion approach
... Soria et al. [2] used the FuzzyQSBA method together with a class assignment algorithm to classify the breast cancer patients in one of the seven breast cancer classes. The algorithm was run on the reduced set of ten ...
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LIMSI COT at SemEval 2016 Task 12: Temporal relation identification using a pipeline of classifiers
... For the intra-sentence classifier, we extracted the forms, semantic types and semantic groups, and the gold standard attributes of the two considered en- tities.. We added their lemmas a[r] ...
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Rapid identification and interpretation of gene-environment associations using the new R.SamBada landscape genomics pipeline
... 2.3.2 | Preprocessing Quality control analysis was performed using the prepareGeno function with a MAF <0.05 and SNP missingness <0.1. The result‐ ing molecular data set consisted of 38,335 SNPs (i.e., ...
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Identification of Novel ΔNp63α-regulated miRNAs using an Optimized Small RNA-Seq Analysis Pipeline
... consensus pipeline for sequencing of small RNAs has not been ...analysis pipeline using Partek Flow, circumventing the need for analyzing data via scripting ...The pipeline was evaluated ...
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Identification of mutant p53 inhibitors by high-content screening
... of mutant analyzed, the cel- lular system and other technical ...recognized mutant p53 target genes (such as MDR1 ...fied using large sets of breast cancer ...
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Pipeline for the identification and classification of ion channels in parasitic flatworms
... built using 400 dipeptide composition ...built using all 475 features. The classification models were validated using five-fold cross-validation, and assessed against the classifications of known ion ...
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A software pipeline for processing and identification of fungal ITS sequences
... extracted using DNeasy Plant Mini Kit (QIAGEN, Hilden); amplified using READY-TO-GO PCR beads (QIAGEN) and the ITS1F and ITS4 primers; purified using the QiaQuick Spin Procedure Kit (QIAGEN); and ...
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Explicit Argument Identification for Discourse Parsing In Hindi: A Hybrid Pipeline
... Rohit Jain, Himanshu Sharma, and Dipti Misra Sharma. 2016. Using lexical and dependency features to dis- ambiguate discourse connectives in hindi. In LREC. Sudheer Kolachina, Rashmi Prasad, Dipti Misra Sharma, and ...
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Identification and Analysis of a Hyperactive Mutant Form of Drosophila P-Element Transposase
... of mutant transposase proteins with higher or novel activities compared to those of the wild-type ...activity using in vivo recombination assays, including P-element- mediated germline ...S129A ...
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Identification and functional analysis of miRNAs in developing kernels of a viviparous mutant in maize
... 94 °C for 3 min (1 cycle); 94 °C for 30 s, 60 °C for 30 s, and 72 °C for 30 s (40 cycles). Transcript abundance was identified using SYBR Green PCR Master Mix (Applied Biosystems). Each reaction contained 1× ...
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Identification of novel mutant PAX6 alleles in Indian cases of familial aniridia
... primer, 1X PCR buffer (Promega, USA) and 0.5 U of Taq DNA polymerase (Promega, USA). PCRs were carried out in a MJ Research thermocycler for 35 cycles. PCR condi- tions were 1 minute at 95°C for denaturation, 1 minute at ...
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Development of a New Pipeline for Identification and Characterization of Micro RNAs from Plants
... no pipeline has been set-up using tools available in the public domain which require minimum computational ...analysis pipeline for miRNA sequence data using those freely available ...The ...
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FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data
... run using default k-mer size 31 and default number of threads ...annotation pipeline that calls Bowtie2 as a subprocess for read mapping, that was shown to be 1,000 times faster than previous tools ...
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Plsi: A Computational Software Pipeline For Pathway Level Disease Subtype Identification
... One examples of such studies is The Cancer Genome Atlas (TCGA) [98]. The TCGA initiative is a coordinated e↵ort of analysis and collection of cancer related data sets. Research groups that belong to the TCGA consortium ...
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