Promoters and regulatory elements
Cell-specific differences in activation of NF-kappa B regulatory elements of human immunodeficiency virus and beta interferon promoters by tumor necrosis factor.
... In U937 and Jurkat T lymphoid cells, the inducibility of the different hybrid promoters by TNF-a or phorbol ester varied in a cell type- and promoter context-specific manner; the levels [r] ...
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High-copy suppression of glucose transport defects by HXT4 and regulatory elements in the promoters of the HXT genes in Saccharomyces cerevisiae.
... We have designated these multicopy suppressors DDSEs (DNA sequence dependent suppressing elements). The first DDSE was identified by virtue of its location between HXTl[r] ...
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In-silico identification of cis- acting regulatory elements in 5’ regulatory region of Betaine aldehyde dehydrogenase isoenzymes of selected monocot and dicot
... in promoters region of genes involved in ethylene, abscisic acid and light perception (Yang and Poovaiah, 2002) was found only in Rice, Zoysia and ...in regulatory region of PeBADH2 and ...in ...
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Promoter regions of Plasmodium vivax are poorly or not recognized by Plasmodium falciparum
... of promoters [6-8]. Like higher eukaryotes, promoters of protein coding genes in malaria are transcribed by polymerase II and have a bipartite structure with a basal promoter followed by upstream ...
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An Overview of Transcription Regulatory Elements in Plant
... multiple promoters over a span of a few kilobase ...Response Elements (PREs) is a class of silencing elements acts as either silencers or anti- silencer depending on the type of protein bound (Brown ...
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Pharmacogene regulatory elements: from discovery to applications
... Additional elements up to 5 kb upstream of this region are still considered part of the promoter (light ...blue). Promoters are enriched for transcription factor binding sites (TFBS) and are thought to ...
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Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
... genes promoters 4C- mPax3 (mouse Pax3 promoter), 4C-hPAX3 (human PAX3 promoter) and 4C-mFoxo1 (mouse FoxO1 pro- moter), as well as for the rest of the viewpoints (VP1–VP9) (Additional file 2: Table S1) with ...
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Modelling the conditional regulatory activity of methylated and bivalent promoters
... gene regulatory programs by studying in- dividual protein–protein interactions would require a cur- rently unavailable volume and resolution of proteomics ...inferring regulatory roles of transcription ...
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Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups
... gene regulatory features defined above, more (enriched) or less (depleted) than expected by chance using the Genome Association Tester (GAT) ...marked’ regulatory elements, ...active promoters ...
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Identification of Long-Range Regulatory Elements in the Human Genome
... and promoters interact with each other through a transcription factor protein complex (Schoenfelder et ...enhancer elements as well as their target genes simultaneously by detecting two linearly independent ...
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Transcriptional activation of several heterologous promoters by the E6 protein of human papillomavirus type 16.
... The observations that TATA box-mutated TK and HIV LTR promoters recovered full wild-type E6-induced transcriptional activity only when their respective upstream regulatory elements GC/CA[r] ...
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142026.full.pdf
... key regulatory genes required for macrophage function and ...are regulatory rather than structural in nature One of the primary proposed functions of DNA loops is to bring distal regulatory ...
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Identification and functional characterization of microRNA regulatory elements in Brassicaceae
... miR160 was down-expressed under As treatment in rice [232]. This clue implies a putative correlation between the predicted AP1 motif and the miR160. In Figure S3, the second motif identified of miR160a was GATTTGCATG, ...
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Transcriptional Regulation of Genes Encoding the Selenium-Free [NiFe]-Hydrogenases in the Archaeon Methanococcus voltae Involves Positive and Negative Control Elements
... other promoters resemble those of Eucarya and contain a two have cysteinyl residues in the homologous ...common regulatory elements in the intergenic positive regulation by an activator protein ...
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Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters
... The representation used in Fig. 1d is concise, but it does not provide a suitable visualization to explore the associ- ations between L and H genes in the same cell. Therefore, to quantitatively assess the relation ...
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Evolution of Mobile Promoters in Prokaryotic Genomes.
... these regulatory elements are ...mobile promoters (PMPs), which they defined to be “homologous promoter sequences with non-homologous coding ...that regulatory elements can transfer ...
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Transcriptional Regulation of Cell-type Specific Expression in the Arabidopsis Root
... development (Winter et al., 2011), and chromatin accessibility (Berger et al., 2011). Specific motifs identified as regulating the expression of genes in individual cell-types in plants remains limited but a tissue ...
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Genome wide identification of regulatory elements in Sertoli cells
... An intriguing characteristic of gonadal supporting cells is that long after sex determination, some mutations cause transdifferentiation to the alternate cell fate. In the testis, Dmrt1 is required to prevent postnatal ...
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Cloning and Promoter Identification of Acetoacetyl-CoA Thiolase Gene from Oil Palm, Elaeis guineensis Jacq.
... Basically, this research focuses on the characterization of oil palm AACT gene and identification of its regulatory regions. In microorganisms, AACT enzyme is involved in the first step of polyhydroxybutyrate ...
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Mutational analysis of two herpes simplex virus type 1 late promoters.
... A TATA element is the only consensus sequence element identified in the upstream regulatory region of late viral promoters 18, and deletion studies have indicated that little sequence in[r] ...
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