RAD-seq and Genetic Map Construction
High-density genetic map construction and QTLs analysis of grain yield-related traits in Sesame (Sesamum indicum L.) based on RAD-Seq techonology
... high-density genetic map had been proved to be a very effective and important approach for QTLs detection in rice [8-11] and other crops ...and genetic maps constructed based on permanent ...
14
Construction of the genetic map of the polyoma genome.
... Mutant FII DNA was combined with the full complement of mutant restriction endonuclease fragments, produced by restriction nuclease digestion of FI mutant DNA, and a single, purified wil[r] ...
9
Construction of a genetic map of human chromosome 17 by use of
... Region 2. The loci HOX2, NGFR, COLIAJ, and MPO compose the second group, as they are commonly found together in the same transfectants. The MPO probe has only been used with a more limit[r] ...
5
Construction of a genetic map for Theileria parva: Identification of hotspots of recombination
... similarly low recombination frequencies. It is possible that these observations reflect a limited requirement for the parasite to gen- erate diversity in these regions. Indeed, the extent to which the bo- vine immune ...
7
Filling gaps with construction of a genetic linkage map in tetraploid roses
... a genetic linkage map for tetraploid roses that was constructed from an F 1 segregation population using AFLPs and SSRs on 189 ...linkage map was composed of 295 polymorphic markers that spanned 874 ...
9
Construction of a preliminary genetic linkage map of yerba mate (Ilex paraguariensis)
... female map including 11 linkage groups and a male one with 16 linkage ...Total genetic distances covered by the female and male maps were 223 cM and 678 cM, ...the construction of a preliminary ...
7
Construction of a Genetic Linkage Map in Tetraploid Species Using Molecular Markers
... information about linkage comes from the segregating found in the experimental data. Little work has been done on the theory for predicting the joint segregation allele D, the choice between these two genotypes has no ...
17
Genetic Linkage Map Construction in Pearl Millet Using SSR Markers
... consensus map developed by Rajaram et al 18 , using four F 7 recombinant inbred populations (RIP) based on crosses ICMB 841-P3 × 863B-P2 (RIP A), H 77/833-2 × PRLT 2/89-33 (RIP B), 81B-P6 × ICMP 451-P8 (RIP C) and ...
12
SEG-Map: A Novel Software for Genotype Calling and Genetic Map Construction from Next-generation Sequencing
... haplotype map or sequences generated from low-coverage genome resequencing followed with missing genotype impu- ...linkage map construction. As a result, we developed a software, SEG- Map, to ...
5
A RAD-Tag Genetic Map for the Platyfish (Xiphophorus maculatus) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish
... ABSTRACT Mammalian genomes can vary substantially in haploid chromosome number even within a small taxon (e.g., 3–40 among deer alone); in contrast, teleost fi sh genomes are stable (24 – 25 in 58% of teleosts), but we do ...
45
SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing
... density genetic map can provide sufficient information to accelerate the genome breed- ...for genetic linkage map con- struction for tobacco were achieved by using molecular marker based ...
11
Construction of cytogenetic map of Gossypium herbaceum chromosome 1 and its integration with genetic maps
... 30 genetic maps of cotton had been constructed [56], most of them used different mapping populations with different population ...the genetic markers were often mapped at different gen- etic positions, even ...
10
Genetic analysis of the human infective trypanosome Trypanosoma brucei gambiense: chromosomal segregation, crossing over, and the construction of a genetic map
... vers/chromosome compared with the 1.02 calculated for the TREU 927 map, despite comparable coverage of the genome. Indeed, in several progeny clones, evidence of recombination was extremely rare or, in the case of ...
12
Construction of a 10,000-Marker Ultradense Genetic Recombination Map of Potato: Providing a Framework for Accelerated Gene Isolation and a Genomewide Physical Map
... The program ComBin (B untjer et al. 2000a; available at http://www.dpw.wur.nl/pv/) was used for final inspection. ComBin removes the redundancy due to cosegregating markers and draws connections between nonredundant ...
13
Construction of a high-density genetic map: genotyping by sequencing (GBS) to map purple seed coat color (Psc) in hulless barley
... for map construction using JoinMap ...integrated map was computed for the male and female parents using the combined group for map inte- gration function in the MergeMap ...
11
Genetic map construction and QTL analysis of nitrogen use efficiency in spinach (Spinacia oleracea L.)
... of genetic factors governing ...a genetic linkage map and several QTL regions were identified that can be breeding targets for improvement of NUE in ...
16
Construction of genetic linkage map and QTL analysis of sinksize traits in pearl millet (Pennisetum glaucum)
... linkage map constructed primarily using SSCP-SNP markers is the first to be reported for pearl ...this genetic map will prove useful in locating and manipulating genes of interest and in selection of ...
26
Development and characterization of novel microsatellite markers for the Common Pheasant (Phasianus colchicus) using RAD-seq
... 2012) and whole genome re-sequencing (e.g. Yang et al. 2015) have been consistently applied depending on the purpose of the research and on a budget. We designed a panel of 13 multiplexed microsatel- lite markers that ...
7
RAD Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene
... linkage map will also be of great ...genome map was beyond the scope of the current ...the RAD libraries, either through the use of a less fre- quent cutting restriction enzyme or bioinformatically, ...
13
Statistical analysis of genetic interactions in Tn-Seq data
... through construction of com- plex random transposon insertion libraries and quan- tification of each mutant’s abundance using next- generation ...identifying genetic inter- actions, which involves comparing ...
12