Repeat regions
Use of Outer Surface Protein Repeat Regions for Improved Genotyping of Staphylococcus epidermidis
... serine-aspartate repeat region of sdrG (Fbe) and the repeat region of the accumulation-associated protein gene (aap) were evaluated for the ability to discriminate among previously well-characterized ...
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Interaction of Peptides with Sequences from the Newcastle Disease Virus Fusion Protein Heptad Repeat Regions
... Typical of many viral fusion proteins, the sequence of the Newcastle disease virus (NDV) fusion protein has several heptad repeat regions. One, HR1, is located just carboxyl terminal to the fusion peptide, ...
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Mutations in the fusion peptide and heptad repeat regions of the Newcastle disease virus fusion protein block fusion.
... 7654 Downloaded from http://jvi.asm.org/ on November 9, 2019 by guest Nonconservative mutations were introduced by site-specific mutagenesis into the fusion peptide and the adjacent hept[r] ...
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Optimization of sequence alignment for simple sequence repeat regions
... SNPs are more frequent than INDELs. Therefore, all designed algorithms for sequence alignment fit the vast majority of the genomic sequence without considering microsatellite regions, as unique sequences that ...
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Multiple bidirectional initiations and terminations of transcription in the Marek's disease virus long repeat regions.
... Our results, from both cDNA analysis and Si nuclease protection studies, consistently indicate that transcription can be either initiated or terminated within or near the expanded region[r] ...
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Computational analysis in vivo p53 binding sites in the context of chromatin and repeat regions
... sequences of primate-specific interspersed repeats. Around 1509 of ≈319, 000 human ERV LTR regions have a near-perfect p53 DNA binding site [14]. Zemojtel et al. [15] reported that about 15 percentages of in vivo ...
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Latent transcripts of Marek's disease virus are clustered in the short and long repeat regions.
... PolyA+ RNAs extracted from MDV-induced kidney lymphoma cells and from MKT-1 cells, a nonproducing lymphoblastoid cell line derived from a tumor induced by MDV, were electrophoretically s[r] ...
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Genetic polymorphism and natural selection of circumsporozoite surface protein in Plasmodium falciparum field isolates from Myanmar
... central repeat region was highly poly- morphic in global ...non-repeat regions revealed limited polymor- phism, but differences were also identified between or among global PfCSP according to the ...
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Coding Tandem Repeats Generate Diversity in Aspergillus fumigatus Genes
... coding repeat regions encode pu- tative cell wall ...6-amino-acid repeat (P-G/S/ E-QPS-V/A) showing significant homology to repeats found in the immunoglobulin A-binding beta antigen of Streptococcus ...
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The Yeast Nuclear Pore Complex and Transport Through It
... FG-repeat regions contributed by the 160 copies of the different types of FG Nups anchored in and around this tube; work in yeast in- dicated that no ATPases or GTPases are needed as compo- nents of the ...
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Expansion of Lysine rich repeats in Plasmodium proteins generates novel localisation sequences that target the periphery of the host Erythrocyte
... repetitive regions of other proteins can affect activity: deletion of repeat regions of the parasite circumsporozoite protein (CSP), and ring exported protein 1 (REX1) lead to loss of protein ...
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Long terminal repeat (LTR) sequences, env, and a region near the 5' LTR influence the pathogenic potential of recombinants between Rous-associated virus types 0 and 1.
... The results of the oncogenicity tests indicate that i the long terminal repeat regions of RAV-1 and RCAN play a major role in disease potential, Ui subgroup A envelope glycoproteins are [r] ...
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Kaposi's Sarcoma-Associated Herpesvirus (Human Herpesvirus 8) Contains Two Functional Lytic Origins of DNA Replication
... gram of a Southern blot of EcoRI- and DpnI-cleaved total cellular DNA from BCBL-1 cells transfected by electroporation with pDA12 with or without a plasmid expressing HHV8 ORF 50 (pEXP50). Blots were hybridized with ...
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Mutational Analysis of Heptad Repeats in the Membrane-Proximal Region of Newcastle Disease Virus HN Protein
... heptad repeat motifs which have been shown by site-directed mutagenesis to be critical for fusion ...Heptad repeat motifs mediate protein-protein interactions by enabling the formation of coiled ...these ...
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Automatically Mining Facets for Queries from Theirresules
... In this paper, learn the problem of finding query facets. We propose a methodical key, which we refer to as QDMiner, to involuntarily mine query facets by aggregating recurrent lists from free text, HTML tags, and ...
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An Overlapping Bacterial Artificial Chromosome System That Generates Vectorless Progeny for Channel Catfish Herpesvirus
... direct repeat regions, restriction digestion analysis of rCCV DNA demon- strates that unit-length molecules (with both direct terminal repeats restored) are present in infected CCO cells ...
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Model of trigger mechanisms of SARS CoV-2 infections
... contains the main protein segments that facilitate virus- cell fusion, including the fusion peptide (FP), two heptad- repeat regions (HR1 and HR2), transmembrane domain (TM[r] ...
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Impact of Genetic Background on Allele Selection in a Highly Mutable Candida albicans Gene, PNG2
... the repeat regions, nucleotide sequences were ...the repeat-containing region was ...of repeat regions of different lengths cannot be easily ...assessed. Repeat regions ...
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Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions
... methylated regions designated iiDMRs. A list of 356 regions that display differential methylation between inbred individuals, generated from 6 adjacent CpGs that support differential methylation and a ...
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cis-acting regulatory regions in the long terminal repeat of simian foamy virus type 1.
... Taf of SFV-1 had no effect on gene expression directed by the LTR of the related human foamy virus, whereas Taf transactivates gene expression directed by the LTRs of the human and simia[r] ...
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