RNA secondary structural models for ERRE-1
RNA Secondary Structures: Combinatorial Models and Folding Algorithms
... than RNA to the general public, as it encodes the essential genetic information for all cells, is standard material in most high school biology classes, and has even made its way into common parlance, such as “it ...
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Report. RNA Secondary Structural Determinants of mirna Precursor Processing in Arabidopsis
... the secondary structure of the lower stem as critical for miRNA biogenesis, whereas the secondary structure of the upper and middle stems is less or not ...
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Structural RNA Homology Search and Alignment Using Covariance Models
... based RNA modeling software package applicable to any RNA family, developed by Michael Brown and David Haussler at the University of California, Santa Cruz ...
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RNA Movies 2: sequential animation of RNA secondary structures
... ABSTRACT RNA Movies is a simple, yet powerful visualization tool in likeness to a media player application, which enables to browse sequential paths through RNA secondary structure ...visualize ...
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Valid Plane Trees: Combinatorial Models for RNA Secondary Structures With Watson-Crick Base Pairs
... COMBINATORIAL MODELS FOR RNA SECONDARY STRUCTURES WITH WATSON–CRICK BASE PAIRS ∗ FRANCIS BLACK † , ELIZABETH DRELLICH ‡ , AND JULIANNA TYMOCZKO † ...of RNA plays a central role in ...used ...
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Designing RNA secondary structures is hard
... of secondary structures is NP-complete if one adds natural constraints of the form: index i of the sequence has to be labeled by base ...realistic models of ...the RNA design pieces of software and ...
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Structural Constraints on RNA Virus Evolution
... that RNA secondary-structure formation through internal base pairing limited sequence variability at these sites, an algorithm was developed to detect covariant sites among HGV/GBV-C sequences of different ...
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Secondary Structural Elements within the 3′ Untranslated Region of Mouse Hepatitis Virus Strain JHM Genomic RNA
... of RNA molecules may cause a particular nucle- otide to form different configurations, resulting in RNA mol- ecules that are cut by both single-strand-specific and double- strand-specific RNases at the same ...
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RNA secondary structure prediction including pseudoknots
... predicting RNA secondary structures are based on thermodynamic models, searching for the structure with minimum free energy (MFE)[Zuker, ...Vienna RNA Package [Hofacker et ...
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A method for aligning RNA secondary structures and its application to RNA motif detection
... Vienna RNA package's RNAsubopt function with setting "-e 0", we then folded all obtained sequences to form the structure ...given RNA sequence, the setting "-e 0" resulted in multiple ...
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RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods
... test models for the evolution of helical regions of RNA sequences, where the base pairing constraint leads to correlated compensatory substitutions occurring on either side of the ...These models are ...
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Structural implications of RNA dimerization in a gamma retrovirus
... the RNA elements involved and the structural consequences associated with retroviral dimer formation were ...throughput RNA SHAPE chemistry can be employed to authoritatively interrogate and define ...
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Structural and energy determinants in protein-RNA docking
... the structural and energetic determinants of protein-RNA interactions harbors the potential to understand key cell processes at molecular level, such as gene expression and ...and structural biology ...
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Covariance models for RNA structure prediction
... ing RNA contacts is enhanced by including in the parameters Boltzmann learning external information obtained from a secondary structure prediction ...
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Three Essays on Structural Models
... cient secondary market, the share price of the firm quickly drops when the misrepresentation is ...revelation. 1 Firms use many vehicles to finance their operations including common and preferred shares, ...
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Spanish Words With The Letter Erre
... of erre at Merriam-Webster's Spanish-English ...z. Erre Spanish to English Translation Spanish ...we. ERRE DOBLE Translation in English ...phoneme erre can refer to a dough or double ...and ...
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Study at U-ERRE. Mexico: Quick Facts.
... Student ID. Upon arrival all students are asked to visit the Registrar’s Office to create their own student ID. All U-ERRE students create a unique colored code. You can use this code to get your personalized ...
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Structural Studies of RNA-dependent RNA polymerases
... palm, thumb and fingers present in the right hand fold polymerases, the similarities.. are only superficial (Fig.[r] ...
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RNA Secondary Structure Prediction
... folding, in large part is determined by base-pairing A-U and C-G are the canonical base pairs. other bases will sometimes pair, especially G-U[r] ...
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Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein.
... When this motif was aligned with other known viral RNA polymerases, the astrovirus serotype 1 deduced amino acid sequence showed.. greatest similarity with the polymerase motifs of virus[r] ...
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