SNP detection and selection for 1 K pear array
Genetic selection for trotting ability: SNP detection in genes associated with sporting performance and temperament useful for the marker assisted selection in the Spanish Trotter Horse
... of selection has reduced the genetic diversity of the ...early selection of the animals belonging to this ...the selection of the top and bottom 5% of the animals in the genetic ranking of sporting ...
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Illumina Snp Array Protocol
... impacting snp can aid in cancer society, where we recommend regular backups of ...Densest snp arrays immediately became possible to which no competing financial relationships among species to the ...
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Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications
... one SNP that is located in the previ- ously reported Xa7 QTL region (Chen et ...by SNP markers discovered using the C6AIR can also be readily converted to other genotyping platforms, such as KASP, Taqman, ...
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Accurate detection of uniparental disomy and microdeletions by SNP array analysis in myelodysplastic syndromes with normal cytogenetics.
... using SNP array analysis can distinguish MDS from other causes of bone marrow cell dysplasia and pancytopenia due to the effects of drugs, environmental toxins or aberrant immune responses, thus aiding in ...
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Tag SNP Selection for Association Studies
... the detection of the influence of a single common unmeasured variant influencing disease risk in the majority of cases, and that little additional gain in power is achieved by increasing the density of SNPs ...
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Construction of a versatile SNP array for pyramiding useful genes of rice
... 3.2. Selection of SNPs Linkage disequilibrium (LD) of SNPs within the subspecies groups of Oryza sativa has been reported to be greater than 500 kb in template japonica, 150 kb in tropical japonica, and 75 kbp in ...
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Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization
... Genotyping Array, whose 616,201 variants were chosen from a set of ...an array that could be used to genotype the entire Pyrus NCGR collection; iii) the duplicated nature of the Pyrus genome; and iv) the ...
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Development of the catfish 250K SNP array for genome wide association studies
... the array. The performance evaluation of the SNP array by genotyp- ing samples from pedigree families and unrelated wild populations suggested high SNP conversion rates (~80%) and high ...
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Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data
... assumptions. Array CNs are at best proportional to the average CNs in the sam- ple ...free, array CNs are insufficient for determination of an identi- fied subclone’s integer CNs, its cell fraction and the ...
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Development and validation of a high density SNP genotyping array for African Oil Palm
... Caetano-Anolles, K., Kim, H., and Ryu, Y.C. (2015). Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju ...
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Database mining for selection of SNP markers useful in admixture mapping
... 500 K was downloaded from http:// www.affymetrix.com. The Affymetrix 500 K array sets con- tain "quasi-random" or anonymous SNPs that are spread evenly across the genome and are selected on the basis ...
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High Resolution Mapping of QTLs for Heat Tolerance in Rice Using a 5K SNP Array
... Of these five QTLs, two high effect QTLs, one novel ( qSTIPSS9 .1) and one known ( qSTIY5.1/qSSIY5 .2), were mapped in less than 400 Kbp genomic regions, comprising of 65 and 54 genes, respectively. Conclusions: ...
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An optimization framework for unsupervised identification of rare copy number variation from SNP array data
... edge detection rather aggressively to identify all candidate regions that may correspond to ...micro- array technology, as seen in Figure ...edge detection scheme that will be most appropriate for ...
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Classification tree for detection of single nucleotide polymorphism (SNP) by SNP interactions related to heart disease: Framingham Heart Study
... direct detection of local two-variable ...negligible selection bias; ii) sensitivity to curvature and local pairwise interactions between regres- sor variables; iii) inclusion of categorical predictor ...
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How-To: SNP and INDEL detection
... NGS SNP and INDEL detection Mutation Analysis Identifying known, and discovering novel genomic mutations, has been one of the most popular applications of next generation sequencing (NGS) tech- ...mutation ...
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Heterogeneous computing architecture for fast detection of SNP-SNP interactions
... Keywords: SNP-SNP interactions, Genome-wide association studies, Graphic processing unit, Many Integrated Core coprocessor, Intel Xeon Phi, CUDA Background We are witnessing a dramatic shift in the design ...
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Identification of structural aberrations in cancer by SNP array analysis
... Ultimately, SNP array analysis should provide a way to reliably subclassify tumors on the basis of shared genetic abnormalities, so that patients can be assigned to the most appropriate ...as SNP ...
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Normalization of Human Y Chromosome SNP-Array Data
... Another aspect of the modulation was the use of SD to determine how much female’s markers should modulate the male markers. If a marker had a high SD, not much was known about that marker, and to use it to modulate the ...
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Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis
... Amplification, deletion, and loss of heterozygosity of genomic DNA are hallmarks of cancer. In recent years a variety of studies have emerged measuring total chromosomal copy number at increasingly high resolution. ...
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A Scalable Method for Cross Platform Merging of SNP Array Datasets
... N 1 samples may be in Affyme- trix Human Mapping 250 K arrays, while other N 2 samples are in Affymetrix ...former array contains about a quarter of a million probesets, while the latter contains ...
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