Ssr and Snp
Report on the development of putative functional SSR and SNP markers in passion fruits
... by SSR and SNP loci were ...by SSR mark- ers were similar to those found in our previous studies using the same accessions of ...20 SSR markers [44]), 20% (combination of 60 SSRs, 104 SNPs, ...
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Identification of QTLs for grain yield and some agro-morphological traits in sunflower (Helianthus annuus L.) using SSR and SNP markers
... 2002). SSR are tandem repeats of short (1 to 6 bp) DNA ...of SSR markers include their easy use, high information content, codominant inheritance pattern, even distribution along chromosomes, ...
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Empirical evaluation of DArT, SNP, and SSR marker-systems for genotyping, clustering, and assigning sugar beet hybrid varieties into populations
... Dominant and co-dominant molecular markers are routinely used in plant genetic research. In the present study we assessed the success-rate of three marker-systems for estimating genotypic diversity, cluster- ing ...
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A post labeling method for multiplexed and multicolored genotyping analysis of SSR, indel and SNP markers in single tube with bar coded split tag (BStag)
... temperatures were at least 6°C higher than the BStag primers. One of the BStag sequences was attached to the 5’ end of the forward primer of the four citrus SSR markers. The concentrations of unlabeled primers in ...
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Addition of 455 Microsatellite Marker Loci to the High-Density Gossypium hirsutum TM-1 x G. barbadense 3-79 Genetic Map
... SHIN-prefixed SSR markers were mapped using the 186 RILs derived from a cross between ...mapped SSR marker loci without giving the actual mapping ...of SSR or SNP markers that would be ...
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Analysis of simple sequence repeat (SSR) structure and sequence within Epichloe endophyte genomes reveals impacts on gene structure and insights into ancestral hybridization events
... B10 SSR in E. uncinata. SSR length polymorphism analysis of ten different strains of ...a SNP (CAA to CAG) that distinguished it from the other strains in this group (Fig ...
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Mining of single nucleotide polymorphism (SNP) and simple sequence repeats (SSRs) from EST tropical fruits
... [9]. SNP is a single base change at DNA sequence with alternative of two possible nucleotides at a define position ...[20]. SNP is as a powerful marker due to their highly abundance and variants in organism ...
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ESTIMATION OF GENETIC DIVERSITY AND HYBRID IDENTIFICATION IN AMERICAN COTTON (GOSSYPIUM HIRSUTUM L.) BY PCR BASED RAPD ANALYSIS
... instance SSR (microsatellite), ISSR, RFLP, AFLP, SNP and RAPD are being used for analysis of genetic diversity and evaluation of hybrids among different crop ...
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Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice
... rice. SSR markers are co-dominant, multi-allelic, easy to use and inexpensive; thus, they have been the most widely used markers in rice for a long period of time (Tautz 1989; McCouch et ...2002). SNP ...
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The application of high resolution melting in the analysis of simple sequence repeat and single nucleotide polymorphism markers in a pea (Pisum sativum L ) population
... one SNP increased the resolution of ...of SSR markers by HRM in plant species (Li et ...for SSR markers in genotyping of a pea RIL ...analysed SSR markers (PSMPSAA72, PSMPSAA153 and ...
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Identification of Genetically Distinct Cassava Clones from On Farm Plantations to Widen the Thai Cassava Breeding Gene Pool
... genomic SSR and 17 expressed sequence tags(EST)-derived SSR markers were selected based on marker type, informativeness and linkage group from the published literature [12,20-22] for the SSR ...
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Evaluation of diversity and resistance of maize varieties to Fusarium spp. causing ear rot in maize under conditions of natural infection
... Simple sequence repeat (SSR) markers have wide applicability for genetic analysis in crop improvement strategies (Inghelandt et al. 2010), using maize in- bred lines and hybrids (Bedoya et al. 2017; Saiyad & ...
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Racial differences in the association of CD14 polymorphisms with serum total IgE levels and allergen skin test reactivity
... C-159T SNP with total serum immunoglobulin E (IgE) levels and ...C-159T SNP in subjects of African ...C-159T SNP and other CD14 SNPs (C1188G, C1341T) were associated with total serum IgE levels and ...
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Ascertaining narrow genetic base in commercial accessions of wheat commonly grown in Gujarat via molecular markers
... used SSR markers to investigate genetic diversity in cultivated hexaploid wheat genotypes of ...The SSR markers have also been successfully used to characterize genetic diversity among wild relatives of ...
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An online conserved SSR discovery through cross-species comparison
... genomics SSR discovery (CG- SSR) web service comprises eleven representative verte- brate species (human, chimpanzee, orangutan, mouse, rat, opossum, rhesus, cow, dog, zebrafish, and medaka) for ...
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Analysis of genetic diversity of Leuciscus leuciscus baicalensis using novel microsatellite markers with cross-species transferability.
... Among the 30 primer pairs developed from L. leuciscus baicalensis, only three EST- SSRs successfully amplified target fragments in all cross-species: BJZ6, BJZ34, and BJZ46. Furthermore, four gSSR markers failed to ...
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Comparative study of EST-SSR, SSR, RAPD, and ISSR and their transferability analysis in pea, chickpea and mungbean
... have used 10 EST-SSR markers (developed from EST data of pea available on NCBI), in amplification of 3 legumes plants (Table 2). All 10 EST-SSR markers showed more amplification capability in all 3 legumes, ...
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Developmenrt of EST SSR and genomic SSR markers to assess genetic diversity in Jatropha Curcas L
... Several projects to collect germplasm have been carried out in Brazil [37], India [38], and China [39], but sys- tematic work on the collection of germplasm and its evaluation is still in its infancy. The low genetic ...
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Server-Aided Revocable Identity-Based Encryption Revisited
... called SSR-sID-CPA security by weakening the limitation on revoking the challenge identity and capturing both DKE attacks and STKE ...a SSR-sID-CPA secure SR-IBE scheme from ...
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SNP-SNP interaction analysis of NF-κB signaling pathway on breast cancer survival.
... the SNP-SNP interaction between these loci can only be speculated on at this point, our ENCODE and eQTL analyses indicated that SNPs at both of these loci may influence gene expression, particularly ...
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