Start codon
Association of Vitamin D Receptor (VDR) Start Codon FokI Polymorphism with Acute Myelogenous Leukemia
... start codon polymorphism (SCP) which is three codons upstream of a second start site ...potential start (ATG) codons, that can be detected by a restriction fragment length polymorphism (RFLP) ...
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Analysis of genetic diversity among male and female pistachio genotypes using start codon targeted (SCoT) makers
... Start Codon Targeted (SCoT) marker is a novel marker based on Polymerase Chain Reaction (PCR) which is designed based on the short conserved sequences in plant genes surrounding the ATG initiation ...
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Genetic diversity and structure of Capsicum annuum as revealed by start codon targeted and directed amplified minisatellite DNA markers
... of start codon targeted and expressed sequence tag-simple sequence repeat (SCoT and EST- SSR), and single nucleotide polymorphism (SNP) have been utilized in studying and characterizing genetic loci linked ...
13
Differences in the energy of DNA strands interaction in the near start-codon sequences of three bacterial genomes
... Aims: the energy of DNA strands interaction (DsI) can regulate binding of enzymes and regulatory proteins to DNA in gene promoter and upstream region. the purpose of this work was to investigate the mean value of the ...
8
mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity
... the start codon [42]; therefore, if the ribosome could protect from DMS reactivity, we would expect to see in- creased protection over the start codon following transla- tional repression with ...
23
Translational Control of the SigR Directed Oxidative Stress Response in Streptomyces via IF3 Mediated Repression of a Noncanonical GTC Start Codon
... GTC start codon is limited by IF3 and that independent transcription and translation of rsrA ensure that RsrA is present in excess of SigR, providing a buffer to prevent spurious release of SigR ...second ...
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RNA Secondary Structure in the Coding Region of Dengue Virus Type 2 Directs Translation Start Codon Selection and Is Required for Viral Replication
... the start codon and of its context, sug- gests that it may play a role in the viral life cycle in addition to directing translation initiation from the first ...
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Upstream AUGs and upstream ORFs can regulate the downstream ORF in Plasmodium falciparum
... Results: The average number of uATGs and uORFs seen in P. falciparum coding sequences (CDS) is expectedly high compared to other less biased genomes. Certain genes, including the var gene family contain the maximum ...
12
Cap-independent enhancement of translation by a plant potyvirus 5' nontranslated region.
... The TEV 5' NTR minus the start codon was synthesized in vitro from pTL7SN.3 and added to cell-free translation reactions programmed with one of three mRNAs capped and noncapped transcrip[r] ...
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An eEF1A1 truncation encoded by PTI-1 exerts its oncogenic effect inside the nucleus
... start codon initiating ORF1 would facilitate translation initiation at downstream AUG codons and give rise to increased levels of the oncoprotein, which might thereby pass the threshold required for ...
11
Mechanism and Regulation of Protein Synthesis in Saccharomyces cerevisiae
... following start codon recognition enables eIF5 to move into the vacated space and thereby stimulate Pi release from eIF2–GDP+Pi (Nanda et ...UUG codon (Maag et ...upon start codon ...
43
The Enterococcus faecalis EbpA Pilus Protein: Attenuation of Expression, Biofilm Formation, and Adherence to Fibrinogen Start with the Rare Initiation Codon ATT
... translational start codon, not the ATG codon, 120 bp downstream of ATT, which is annotated as the translational ...this codon participates in translational regulation of Ebp ...ATT ...
9
Exploring native genetic elements as plug-in tools for synthetic biology in the cyanobacterium Synechocystis sp. PCC 6803
... To setup the RBS library composed of standard ele- ments, all twenty native RBS sequences studied here were exactly 22-bp upstream of the translational start codon of the respective genes, most of them ...
8
Reverse genetic analyses of TERMINAL EAR like RNA binding protein genes in Arabidopsis thaliana (L ) Heynh : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Molecular Genetics at Massey University, Palmerston North, New Zealand
... 2, 4 dichlorophenoxyacetic acid, synthetic auxin The region upstream of the TEL1 ATG start codon to the 3′ end of the preceding gene includes the promoter and the 5' untranslated region [r] ...
151
T DNA promoter tagging in Nicotiana tabacum : a thesis presented in fulfilment of the requirements for the degree of Master of Philosophy in Genetics at Massey University, Palmerston North, New Zealand
... The most important features required in the plant T-DNA promoter tagging vector were an easily assayed promoterless reporter gene with its start codon just downstream of the right border[r] ...
213
Leader Proteinase of the Beet Yellows Closterovirus: Mutation Analysis of the Function in Genome Amplification
... the start codon of ORF 1a. This codon was fused with the first glycine codon of the BYV replicase ...ATG codon) was generated by changing the ORF 1a start codon to ACA ...
5
Upstream AUG Codons in the Simian Immunodeficiency Virus SIVmac239 Genome Regulate Rev and Env Protein Translation
... AUG start codons (vertical lines) and the upstream AUGs (*). (C) Start codons present between SA5 and the Env start codon in the SIV RNA ...
10
Sequencing of the porB Gene: a Step toward a True Characterization of Neisseria meningitidis
... Previous studies show that PorA expression could be altered by multiple mechanisms (2). Slipped-strand mispairing during replication in the homopolymeric tract of guanidine [poly(G)] and/or thymidine residues between the ...
5
Studies on threonine synthase
... Sense strand sequence from N-terminus of thrC {Nde I site shown in red, start codon underlined to base 443... TCTAATTTGA GCTAAGCCGTA AAAAAGAGAT TAAAAATTNT.[r] ...
259
Polymorphism in the Pertussis Toxin Promoter Region Affecting the DNA Based Diagnosis of BordetellaInfection
... The five different sequences encompassing the PT promoter region the 239 or 249 nucleotides upstream of the start codon of the PT subunit 1 gene amplified with flanking primers found amo[r] ...
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