Statistical analyses and DNA sequences analysis
Statistical modelling and analyses of DNA sequence data with applications to metagenomics
... Another challenge in metagenomic analysis is correctly estimating the relative abundances of genes. When we want to quantify the relative abundances of elements, such as genes or gene fa[r] ...
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A clustering method for repeat analysis in DNA sequences
... Repeat structure of the Arabidopsis genome The 125 Mb A. thaliana genome consists of five chromo- somes ranging from 18 Mb to 30 Mb in length. We applied the suffix tree algorithm for finding exact repeats to each of ...
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Autoregressive Modeling and Feature Analysis of DNA Sequences
... signal analysis of DNA ...of DNA se- quences, there appears to be no constraint to consider only a causal AR model, since the nucleotides in a spatial series need not be constrained to depend on the ...
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Statistical Nonparametric and Linear Mixed Model Analyses of Oligonucleotide DNA Chips Data
... neighborhood analysis for two-type disease ...classification analysis, the selection criterion of genes, and whether the selection method is applicable to multi-type disease ...
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The Weighted Factors Automaton : A Tool for DNA Sequences Analysis
... 4.5 Common longest subsequence In order to simplify the search of the longest common subse- quence to 2 sequences, we propose to add some informations to the “weighted factors automaton”. We have to extract subse- ...
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AN ANALYSIS OF REPETITIVE DNA SEQUENCES IN FIVE SPECIES OF GOSSYPIUM
... After inspection of the final copy of the dissertation, the following members of the Final Examination Committee concur in its approval and recommend its acceptance:[r] ...
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Analyses: Statistical Measures
... 8. Convert the R-R interval graph from seconds to msec. Choose Analysis > Waveform Math and enter parameters as shown in the following figure. Use the channel containing the RR interval as the Source and ...
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Statistical Methods for the Analysis of Forensic DNA Mixtures
... 2.2 The Confidence Interval It has become accepted practice to attach numerical weights to DNA evidence in order to show “whether the patterns are as common as pictures with two eyes, or as unique as the Mona ...
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Towards a molecular phylogeny of the Euglenozoa: analyses of ribosomal DNA sequences and deduced secondary structure elements
... these analyses, which is an unacceptably poor taxon sampling for an inference of euglenozoan major group ...from analyses of base composition ...structure analyses of ribosomal DNA ...
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Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences
... Jstacs is an object-oriented Java library for analysing and classifying sequence data, which emerged from the need for a standardized implementation of statistical models, learning principles, classi- fiers, and ...
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DNA Methylation Analyses
... genomic DNA (500 ng) prepared from HeLa cells with a FastPure® DNA Kit, yielding 20 µl of treated genomic DNA ...genomic DNA was used as the ...Sequence analyses were performed on 24 ...
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Isolation and analysis of DNA sequences associated with the ovine Y chromosome
... Along with the differential pattern shown in related species, these sequences demonstrate that the processes of genomic flux may be involved in the continuing evolution [r] ...
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Analysis of repetitive DNA sequences in the Mexican axolotl Ambystoma mexicanum
... of analysis has been assumed to occur in the axolotl ...the analysis of Davidson et al, (1973) and Graham et al (1974)« These groups used computer fitted models to provide a smooth transition across the ...
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A Quasi-MQ EMD method for similarity analysis of DNA sequences
... long DNA sequences (see Fig. 2 for the residue comparison for long DNA sequences, we can compare the similarity very clearly), but it, being affected by endpoints, may not be fit to compare ...
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DETERMINATION OF NUCLEOTIDE SEQUENCES IN DNA
... labelled DNA which could then be subjected to partial digestion ...sequencing DNA was to find specific methods for breaking it down into small ...into DNA chains with DNA ...and ...
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SUBMITTING DNA SEQUENCES TO THE DATABASES
... to analysis. These include the nucleotide and protein sequences, the CDS (coding sequence, also known as coding region), gene, and mRNA features ...the sequences were deter- mined, and the ...
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DNA Methylation: Methods and Analyses
... of analysis such as quality control are distinctly lacking in both design and how they are ...popular analysis platform, the R programming language (R Core Team, 2017), that is used to carry out most of ...
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Absent words and the (dis)similarity analysis of DNA sequences: an experimental study
... Mohammad Saifur Rahman 1 , Ali Alatabbi 2 , Tanver Athar 2 , Maxime Crochemore 2,3 and M. Sohel Rahman 1* Abstract Background: An absent word with respect to a sequence is a word that does not occur in the sequence as a ...
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Short Exon Detection in DNA Sequences Based on Multifeature Spectral Analysis
... protein DNA twist, protein induced deformability, stacking energy, and Z-DNA stabilizing energy ...the DNA sequence with NCBI accession number ...
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DNA Molecules as Standard Reference Materials I: Development of DNA Identification Sequences and Human Mitochondrial DNA Reference Sequences
... ABD DNA sequencing system uses four different fluorescent dyes to identify each base specific chain termination ...Data analysis is carried out by the Applied Biosystems Analysis program and produces ...
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