[PDF] Top 20 Advances in the identification and analysis of allele-specific expression
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Advances in the identification and analysis of allele-specific expression
... the two different alleles was only first acknowledged in 2002, in a small study where 6 of only 13 genes investigated showed allelic differences [9]. Since these early studies drew attention to possible cis-regulatory ... See full document
5
Allele specific binding of ZFP57 in the epigenetic regulation of imprinted and non imprinted monoallelic expression
... their allele-specific ex- pression in a panel of tissues isolated from reciprocal hy- brid BC and CB conceptuses at embryonic day ...While expression of Nbas and Zfp444 was biallelic in all tis- sues ... See full document
18
Analysis of a new allele of limb deformity (ld) reveals tissue and age specific transcriptional effects of the Ld Global Control Region
... retain expression in embryos but not in ...dimorphic expression in the pituitary, with high levels of expression only in male mice, which was lost in the ... See full document
11
Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1
... locus. Allele-specific qRT-PCR analysis was performed on RNAs extracted from ...The expression from ...show allele-specific expression for imprinted genes from different ... See full document
7
RNAseq analysis of bronchial epithelial cells to identify COPD-associated genes and SNPs
... and allele-specific ex- pression at 68 target assays on 35 genes by next gener- ation sequencing (NGS) (in Additional file 1: Table S1) according to previously described methods [24, ...for analysis ... See full document
13
Analysis of Allele-Specific Expression in Mouse Liver by RNA-Seq: A Comparison With Cis-eQTL Identified Using Genetic Linkage
... Approximately 60% of 284 ASE genes detected by RNA- Seq overlapped with local-eQTL. This was somewhat higher than a previous study that observed an overlap of 40% (Babak et al. 2010). We asked how likely it would be that ... See full document
15
MBASED: allele specific expression detection in cancer tissues and cell lines
... initial analysis we discovered a large number of genes that showed recurrent ASE across multiple samples, including some genes with monoallelic ASE in 20 or more ...monoallelic expression in a ... See full document
21
Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene
... determined from motif analysis of the 8,462 loci derived from the ChIP-chip analysis using STAMP. All members of the highlighted group have matches identical to the canonical CTCF motif model as part of the ... See full document
16
Pseudoexons provide a mechanism for allele-specific expression of APC in familial adenomatous polyposis
... 58% (851/1457) of those with classic polyposis and 9% (376/4223) of those with AFAP had APC mutations by exon-specific sequencing and large rearrangement analysis of the APC gene [3]. Moreover, Grover et ... See full document
14
Genetic–epigenetic interactions in cis: a major focus in the post GWAS era
... the allele-specific mapping approaches that we describe in the next sections can help to extract maximum biological in- formation from GWAS ...and allele-specific analyses ...(e.g., ... See full document
22
SCALE: modeling allele specific gene expression by single cell RNA sequencing
... for Analysis of Single Cell data, unpublished), which explicitly models the technical noise through ...true expression in the cell, with lowly expressed genes more likely to drop ... See full document
15
Identification and expression analysis of two novel members of the Mesp family in zebrafish
... phylogeny analysis presented here ...our analysis indicates that the mesp-bb duplication is not unique to zebrafish, but is also present in fathead minnow (Pimephales promelas), suggesting that fugu, ... See full document
10
Identification and functional analysis of novel genes expressed in the Anterior Visceral Endoderm
... ABSTRACT During early vertebrate development, the correct establishment of the body axes is critical. The anterior pole of the mouse embryo is established when Distal Visceral Endoderm (DVE) cells migrate to form the ... See full document
16
Visualizing Allele Specific Expression In Single Cells
... methylation analysis showed that a similar fraction of the mutant control regions are methylated as the fraction of mutant cells displaying monoallelic H19 expression, suggesting that variability in ... See full document
134
GENETIC ANALYSIS OF A GENE REQUIRED FOR THE EXPRESSION OF ALLELE-SPECIFIC MISSENSE SUPPRESSION IN SACCHAROMYCES CEREVISIAE
... The effect of the sinl-l mutation also appears to involve a certain degree of specificity for the suppressor, for there is not observable reduction of growth rate in the absenc[r] ... See full document
16
Identification of key gene modules for human osteosarcoma by co expression analysis
... In some computational research, disease risk modules have been developed to provide significant measurement for cancer diagnosis and to develop novel treatment strategies [5, 7–10]. The weighted gene co-expression ... See full document
8
Identification and expression profiling of Pht1 phosphate transporters in wheat in controlled environments and in the field
... the expression ampli- con of each TaPht1 gene analysed was amplified (Mastercy- cler â gradient; Eppendorf Scientific, Stevenage, UK) using a gene specific primer pair (Table 1) and RedTAQ ready PCR-mix ... See full document
22
Identification of genes and analysis of prognostic values in nonsmoking females with non-small cell lung carcinoma by bioinformatics analyses
... Gene expression profile GSE19804 was downloaded from the Gene Expression Omnibus (GEO) database and analyzed by using ...survival analysis of hub ... See full document
9
H558R, a common SCN5A polymorphism, modifies the clinical phenotype of Brugada syndrome by modulating DNA methylation of SCN5A promoters
... same allele [6], many researchers have re- ported that H558R improves sodium channel activity in mutated channels by restoring abnormal channel gating kinetics or membrane trafficking ... See full document
10
Correlation between mutations and mRNA expression of APC and MUTYH genes: new insight into hereditary colorectal polyposis predisposition
... gene expression of both APC and MUTYH was reduced in patients ...APC expression was observed in patients without APC germline mutation vs control group (P < ...APC expression in the mutation ... See full document
10
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