[PDF] Top 20 Analysis of synonymous codon usage in Hepatitis A virus
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Analysis of synonymous codon usage in Hepatitis A virus
... the virus with host cells [24]. After we analyzed synonymous codon usage in HAV (Table 2), we found that comparing with other viruses of Picornaviridae, such as Coxsackievirus A9 (ENC = ... See full document
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The characteristics of the synonymous codon usage in hepatitis B virus and the effects of host on the virus in codon usage pattern
... for codon usage variation among gen- omes in microorganisms ...in synonymous codon usage pat- tern ...for codon usage bias [27-30], other selection forces have also been ... See full document
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Comprehensive analysis of the overall codon usage patterns in equine infectious anemia virus
... The synonymous codon usage pattern of EIAV tended to differ from that of horse and donkey (Table 2 and Additional file 2: Figure ...of codon usage between EIAV and its hosts might have ... See full document
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Analysis of the codon usage pattern of the RdRP gene of mycovirus infecting Aspergillus spp
... gene codon usage bias of the eight mycoviruses infecting Aspergillus ...strong codon usage ...Ebola virus, Chikungunya virus, Hepatitis C virus, and West Nile ... See full document
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Patterns and influencing factor of synonymous codon usage in porcine circovirus
... and codon preference, this result shows that nucleotide constraints have a major impact on its synonymous codon ...correspondence analysis indicate codon usage patterns of PCV of ... See full document
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Genome wide analysis of codon usage bias in Bovine Coronavirus
... shape codon usage bias in coronaviruses [39], suggesting that immune selection may play a role in the observed BCoV codon usage ...in synonymous codon usage among ... See full document
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Genomic adaptation of the ISA virus to Salmo salar codon usage
... host codon usage (Table 1 and Figure ...the analysis of codon usage, show that the ISAV virus is the least host-adapted Orthomyxovirus, and the sec- ond least adapted Salmo salar ... See full document
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Modulation of Poliovirus Replicative Fitness in HeLa Cells by Deoptimization of Synonymous Codon Usage in the Capsid Region
... deoptimized codon usage in the Sabin type 2 (Sabin 2) oral poliovirus vaccine (OPV) strain (59, 64, 70) by replacing the natural codons in the capsid region with synon- ymous nonpreferred (minor) ...codons. ... See full document
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Codon bias of influenza a viruses and their hosts
... on codon usage calculation they incorporated the volatil- ity of codons, defined below, into the measurement of the codon ...each codon has nine possible single-nu- cleotide mutational ... See full document
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Nucleotide composition of the Zika virus RNA genome and its codon usage
... exotic codon usage employed by ...umented codon usage adaptation in pandemic ZIKV virus strains ...only virus in this collection that combines A-accumulation with weak ... See full document
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FLEXIBLE SHARING IN DHT BASED P2P NETWORKS USING METADATA OF RESOURCE
... the synonymous codon usage of these ...the synonymous codon usage in three species of fishes from the family Cyprinidae, with high GC3s value for ... See full document
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Impairment of translation in neurons as a putative causative factor for autism
... recent analysis of large collections of de novo mutations in diploid yeast cells did not reveal any obvious signs of selection at the level of coding sequences as suggested by tests of selection that are based on ... See full document
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Large-Scale Synonymous Substitutions in Cucumber Mosaic Virus RNA 3 Facilitate Amino Acid Mutations in the Coat Protein
... large-scale synonymous substitutions in viral genes: altering the viral RNA secondary structure or changing the codon usage bias of the coding ...the codon adaptation index of four chimeric ... See full document
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In silico analysis reveals the role of horizontally transferred genes (HGTs) in shaping the pathogenicity of Xanthomonas
... silico analysis of six Xanthomonas genomes was carried out. Synonymous codon usage pattern study in these genomes revealed that pathogenicity related (PR)-horizontally transferred genes (HGTs) ... See full document
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Compare the differences of synonymous codon usage between the two species within cardiovirus
... codon usage is essential to the understanding of viral evolution, particularly the interplay between viruses and the immune response ...of codon usage bias and nucleo- tide composition within ... See full document
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SHIFT: Server for hidden stops analysis in frame shifted translation
... gene analysis and evolutionary analyses, which includes relative synonymous codon usage (RSCU), relative adaptiveness and codon adaptive index (CAI), were incorporated to analyze the ... See full document
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A cluster of vitellogenin genes in the Mediterranean fruit fly Ceratitis capitata: sequence and structural conservation in dipteran yolk proteins and their genes.
... melanogaster genes have differ- ent codon usage patterns: Synonymous codons are not used with equal frequency and, often, genes from one species share similarities in codo[r] ... See full document
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Contrasted evolutionary constraints on secreted and non-secreted proteomes of selected Actinobacteria
... Background: Actinobacteria have adapted to contrasted ecological niches such as the soil, and among others to plants or animals as pathogens or symbionts. Mycobacterium genus contains mostly pathogens that cause a ... See full document
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The Problem of Counting Sites in the Estimation of the Synonymous and Nonsynonymous Substitution Rates: Implications for the Correlation Between the Synonymous Substitution Rate and Codon Usage Bias
... of synonymous and nonsynonymous opportunity”—the proportion of sites that are synony- substitution (Miyata and Yasunaga 1980; Perler et ...largely synonymous if the ts/tv ratio vary from the relatively ... See full document
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The selection-mutation-drift theory of synonymous codon usage.
... It is argued that the bias in synonymous codon usage observed in unicellular organisms is due to a balance between the forces of selection and mutation in a finite population, wi[r] ... See full document
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