[PDF] Top 20 Detecting microRNA activity from gene expression data
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Detecting microRNA activity from gene expression data
... mRNA gene expression levels [14]. As with our approach, they used gene expression data and publicly available miRNA target prediction ...signatures from gene ... See full document
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GiniClust: detecting rare cell types from single cell gene expression data with Gini index
... each gene X, we sort cells based on its expression levels from the lowest to the highest and then evaluate the cumu- lated expression levels of X as more and more cells are in- cluded ... See full document
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Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome wide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes
... Frozen sections (7–10 μ m thick) of the trunk were prepared at 0.6 total length (TL) and stained with Meyer’s haematoxylin, succinic dehydrogenase and the S58 antibody to slow muscle myosin in order to differentiate ... See full document
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ReTrOS : a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data
... model from Pokhilko et al. [11], showing the 3 gene groups: LHY/CCA1 (black), PRRs (blue), EC (dark ...The data used here is from microarray time-series for the clock genes in wild-type ... See full document
11
Identifying microRNA/mRNA dysregulations in ovarian cancer
... using expression levels of the 127 ...PC2) from these 43 runs were ...tumour from normal using a signal-to-noise ratio (SNR) test using SNR > ...separate from the tumour samples (Figure ... See full document
10
Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
... were from patients with advanced cardio- myopathy and 16 of which were from healthy ...suffered from heart failure due to ischemic (n =86) or idiopathic dilated (n =108) ...obtained from ... See full document
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Integrative analysis of survival-associated gene sets in breast cancer
... The gene set overlap network analysis we performed allowed for the identification of a novel gene set, re- ferred to as the core gene set, that was enriched in pro- liferative ...This gene set ... See full document
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High expression of inositol 1,4,5-trisphosphate receptor, type 2 ITPR2 ) as a novel biomarker for worse prognosis in cytogenetically normal acute myeloid leukemia
... metaphases from BM was used to determine the diagnosis of a normal ...consent from all patients obtained in accordance with the Declaration of ...for gene expression and methylation, ... See full document
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Regulatory mechanisms of microRNA expression
... miRNA expression [8, ...empirical data of 53 research papers has been analyzed ...miRNA expression in various breast cancer cell lines incubated with estradiol ...miRNA expression appears to ... See full document
10
Original Article Down-regulation of microRNA-28 in peripheral blood mononuclear cell plays a role in pathogenesis of type 1 diabetes
... mRNA expression data and microRNA (miR- NA) expression data to identify critical miRNAs in peripheral blood mononuclear cell from type 1 diabetes ...Methods: Gene ... See full document
10
Association between Serum MicroRNA-21 Gene Expression, Carcinoemberyonic Antigen and Clinicopathological Character for Colorectal Cancer
... regulate gene expression on the posttranscriptional level and this may lead to cancer ...of microRNA-21 gene expression and to assess their relation to colorectal cancer (CRC) outcome ... See full document
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High expression of RUNX1 is associated with poorer outcomes in cytogenetically normal acute myeloid leukemia
... microarray expression data for LEF1 was in good agreement with quantitative real time PCR (qPCR) ...RUNX1 expression can be easily ...our gene/ microRNA expression data ... See full document
12
Characterization and potential role of microRNA in the Chinese dominant malaria mosquito Anopheles sinensis (Diptera: Culicidae) throughout four different life stages
... stage-specific expression (q < ...physiological activity during develop- ...stage-specific expression, such as asi-miR-2943 was exclusively expressed in the embryo stage, and asi-miR-1891 could ... See full document
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Detecting relevant changes in high throughput gene expression data
... molecules roughly proportional to the protein’s length. An unfolded protein is roughly proportional to its mass, so it attaches as number of SDS molecules roughly proportional to the protein’s mass. The SDS molecules are ... See full document
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Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma
... the expression levels of 52 mRNAs in this network and overall survival in OS patients based on TARGET ...by microRNA-299 in glioblastoma multi- forme, the upregulation of microRNA-299 is associated ... See full document
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Gene expression and network-based analysis reveals a novel role for hsa-miR-9 and drug control over the p38 network in glioblastoma multiforme progression
... merge expression data with network knowledge for the quanti- fication of the network expression behavior ...obtained from The National Cancer Institute ’ s Pathway Interaction Data- ... See full document
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Computational Techniques To Recover Missing Data From Gene Expression Data
... target gene with missing values and the K nearest reference genes to impute the missing ...target gene is estimated as the weighted average of the jth component of the K reference genes with the weights set ... See full document
10
Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data
... measurements from the qPCR and transform them into estimated mRNA counts (See Eq ...each gene within each cluster (using Eq 2) and probabilistically re-assigning cells to clusters based on their likelihood ... See full document
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Classification of Cancer Gene Subtypes from Clustering of Gene Expression Data
... the gene subtypes co-clustering algorithm called Network assisted Co-clustering for the Identification of cancer Subtypes ...method from matrix factorization-based clustering family in this ...as ... See full document
5
Quantitative Assessment of WT1 Expression by Real Time Quantitative PCR in Pediatric Patients with Acute Myeloblastic Leukemia
... WT1 gene expression was done by standard curve ...each gene was prepared; finally dilution series of ABL and WT1 plasmids with known concentration were used for standard curve ...The ... See full document
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