[PDF] Top 20 Identification of key gene modules for human osteosarcoma by co expression analysis
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Identification of key gene modules for human osteosarcoma by co expression analysis
... on gene correlations and has been used not only to construct gene networks and detect modules/ sub-networks, but also to identify hub genes and select candidate genes as biomarkers ...as ... See full document
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Differential co-expression network analysis for identification of functional modules in HIV infection and tubercolosis-HIV co-infection
... in human immunodeficiency virus (HIV) infected individu- ...HIV co-infection, can be limiting owing to the high inaccuracy associated with conventional diagnostic ...TB-HIV co-infection and HIV ... See full document
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Exploring the key genes and pathways of side population cells in human osteosarcoma using gene expression array analysis
... the gene interaction network contained 542 nodes and 1163 ...to analysis these genes, and core genes were ranked according to the predicted ...the modules of the gene interaction network, and ... See full document
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Original Article Identification of key genes and pathways in human glioblastoma multiforme by co-expression analysis
... of human gliomas, whereas downregulat- ed CDK1 inhibits proliferation activities of human malignant gliomas ...their key roles in regulating GBM progression. Subsequently, WGCNA analysis ... See full document
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Integrated multifactor analysis explores core dysfunctional modules in autism spectrum disorder
... single gene, gene module represents a series of highly correlated genes, and the genes in the same module may have similar biological ...a gene module with potential function is actually a bridge to ... See full document
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Identification of key genes and pathways in human clear cell renal cell carcinoma (ccRCC) by co-expression analysis
... weighted gene co-expression network to identify key genes and pathways associated with the progression of ccRCC (n = ...enrichment analysis demonstrated that upregulated differentially ... See full document
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Air pollutant chemicals and oxidized lipids exhibit genome wide synergistic effects on endothelial cells
... yellow modules. These three modules also exhibited the highest modular mean SI (Figure 3a, panel ...found modules (pathways) of synergistically expressed ...enrichment analysis of gene ... See full document
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Co-expression network analysis identifies a gene signature as a predictive biomarker for energy metabolism in osteosarcoma
... pink modules par- ticipated in osteoclast differentiation, the mTOR, TNF, and Ras signaling pathways, and the focal adhesion- related metabolic ...a key regulator of multi-cellular signaling path- ways in ... See full document
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Identification and evaluation of network modules for the prognosis of basal-like breast cancer
... this analysis, although in some cases distant metastasis free survival was ...reliable human functional interaction network ...(for gene expression) were calculated for all interacting ... See full document
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Analysis of long non-coding RNAs in glioblastoma for prognosis prediction using weighted gene co-expression network analysis, Cox regression, and L1-LASSO penalization
... RNA expression profiles of GBM from Chinese Glioma Genome Atlas (CGGA), National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO), and the European Bioinformatics Institute ... See full document
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Promoter identification and analysis of key glycosphingolipid biosynthesis-globo series pathway genes in piglets.
... the expression of the required mammalian protein receptors (Boldin, 2008; Li et ...differential gene expression in duodenal tissues collected from full-sib pairs of Sutai pigs (Duroc × Meishan) with ... See full document
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Identification of gene co-regulatory modules and associated cis-elements involved in degenerative heart disease
... cultured human cells [11] that genes involved in a common physiological function tend to be regulated as ...a co-regulatory module [12], genes undergo similar changes in expression that act to ... See full document
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Identification of key gene pathways and coexpression networks of islets in human type 2 diabetes
... developed Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment ...the modules from the PPI network, and the gene annotation enrichment of modules were ... See full document
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Expression profile analysis identifies key genes as prognostic markers for metastasis of osteosarcoma
... enrichment analysis revealed up-regulation of immune response gene sets, including antigen presentation (HLA-DMB and HLA- ...SPINT2 gene is epigenetically silenced or downregulated in human ... See full document
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Identification of co expression modules and pathways correlated with osteosarcoma and its metastasis
... an analysis of omics data. Weighted gene co-expression network analysis (WGCNA) is a method that is widely used in exploration of co-expression modules correlated ... See full document
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Application of weighted gene co-expression network analysis to identify key modules and hub genes in oral squamous cell carcinoma tumorigenesis
... which expression of five hub genes of the turquoise module was positively correlated with disease status and expres- sion of five hub genes of the brown module was negatively correlated with disease ...The ... See full document
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Identification of glioblastoma gene prognosis modules based on weighted gene co-expression network analysis
... from human glioblastoma samples were obtained from the TCGA data portal ...subsequent analysis. As some genes without significant changes in expression between samples will be highly correlated in ... See full document
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From the core to beyond the margin: a genomic picture of glioblastoma intratumor heterogeneity
... hundred key genes which expression was highly correlated with the surgical sampling plan: from the core to beyond the ...of human gliomas [38]. In GB, its expression increases with tumor grade ... See full document
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Ten hub genes associated with progression and prognosis of pancreatic carcinoma identified by co-expression analysis
... High expression of TPX2 may serve as a prognostic marker and promotes tumorigenesis and metastasis of HCC ...combined expression with BUB1B and PINK1 may be a predictor of poor outcome in adrenocortical ... See full document
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VAN: an R package for identifying biologically perturbed networks via differential variability analysis
... network modules of interest, VAN generates output files that are directly importable into Cytoscape [26], together with a ‘ color-blind safe ’ edge palette file ...analyse gene expression data in ... See full document
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