[PDF] Top 20 Microarray data analysis: a practical approach for selecting differentially expressed genes
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Microarray data analysis: a practical approach for selecting differentially expressed genes
... a microarray experiment are influenced by each step in the experimental procedure, from array manufacturing to sample preparation and application to image analysis ...techniques. Analysis by northern ... See full document
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DNA microarray data integration by ortholog gene analysis reveals potential molecular mechanisms of estrogen-dependent growth of human uterine fibroids
... integrated analysis of expression data collected by independent studies revealed that expression of two genes, ALDH1A1 and CRABP2 for RA synthesis or mobili- zation was differentially ... See full document
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A weighted average difference method for detecting differentially expressed genes from microarray data
... ranking genes in accordance with their degrees of differential expression can be divided into t-sta- tistic-based methods and fold-change (FC)-based meth- ...for selecting DEGs with two ...ranked ... See full document
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Data Mining in Networks of Differentially Expressed Genes during Sow Pregnancy
... three genes were designed using Pri- mer Premier 5 software (Supplementary Material: Table ...ation analysis between the SNPs and reproductive traits was carried out using the GLM (General Linear Model) ... See full document
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Microarray profile of differentially expressed genes in a monkey model of allergic asthma
... the microarray data was estimated by examin- ing a small subset of the cDNA elements that was present in duplicate or triplicate on the ...the microarray encodes a different region of the same ...149 ... See full document
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Use of cDNA Microarrays To Monitor Transcriptional Responses of the Chestnut Blight Fungus Cryphonectria parasitica to Infection by Virulence-Attenuating Hypoviruses
... represent genes not expected to be altered in expression upon hypovirus ...of genes predicted by microarray analysis to be differentially ...avoid data processing problems asso- ... See full document
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Analysis of striatal transcriptome in mice overexpressing human wild-type alpha-synuclein supports synaptic dysfunction and suggests mechanisms of neuroprotection for striatal neurons
... the data from the microarray was assessed (see Table 1 and Additional file 1 Figure S1) by inspecting: (1) the percentage of genes called present (include all changed genes p < ...833 ... See full document
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RETRACTED ARTICLE: Microarray analysis for differentially expressed genes of patients undergoing total knee arthroplasty with ischemia preconditioning
... database. Differentially expressed genes (DEGs) between IPC group and control were screened with Limma package in R ...enrichment analysis was performed by the DAVID online ... See full document
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Batch correction of microarray data substantially improves the identification of genes differentially expressed in Rheumatoid Arthritis and Osteoarthritis
... Expression Microarray Data” (ComBat) estimates parameters for location and scale adjustment of each batch for each gene independently ...a data subset of 24 arrays (of a total of 120) in order to ... See full document
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Original Article Identification of differentially expressed genes between male and female patients with acute myocardial infarction based on microarray data
... expression microarray has become a useful tool to identify differentially expressed genes (DEGs) and networks as prognosis asso- ciated biomarkers and therapy ...in microarray ... See full document
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Original Article Analysis of differentially expressed genes in colorectal adenocarcinoma with versus without metastasis by three-dimensional oligonucleotide microarray
... between data from different patient groups (with or without lymph node invasion, colon or rectal, with or without angio-lymphatic invasion, with or without ...Significance Analysis of Microarrays (SAM) and ... See full document
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Functional Analysis of Adhesion Factors and Signaling Mechanisms in Lactobacillus acidophilus NCFM
... model analysis of microarray data used in this study allows for significant differences in gene expression to be detected based on strain, time, and the combined effect of strain and ...is ... See full document
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Galectin-9 Functionally Impairs Natural Killer Cells in Humans and Mice
... RT-PCR analysis of human NK cells stimulated by ...6 genes shown to be maximally differentially ex- pressed (greater than 7-fold change) in the microarray analysis (Table ...six ... See full document
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Bioinformatics analysis of differentially expressed genes in rotator cuff tear patients using microarray data
... these genes, and core genes were ranked according to the pre- dicted ...these genes, GNG13 showed the highest node degree which was 32. The core genes and their corresponding degree were shown ... See full document
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Whole transcriptome, high throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro
... locations. Analysis of these mapped reads showed 2,584 genes (1,392 upregulated; 1,192 downregulated) and 757 putative natural antisense transcripts (558 upregulated; 119 downregulated) that were ... See full document
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Statistical Tests for Identification of Differentially Expressed Genes in Microarray Data
... In microarray experiments, differentially expressed genes, or discriminator genes, are the genes with considerably different expression patterns in two user-defined ...Typically ... See full document
6
Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis
... normalized data (Figure 1a,b), especially the model-based expression values as compared to the traditional average dif- ference ...reflects data processing on the fluorescence level with recalculation of ... See full document
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High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation
... are expressed across the mammalian genome and contribute to the pervasive transcription ...highly expressed in the white matter (WM) of the human frontal cortex compared to the grey matter (GM) and ... See full document
12
Gene Expression Analysis in Aspergillus flavus Identified a Gene, ahpA, Involved in Protection Against Organic Peroxides.
... identify genes that are essential for particular processes in Aspergillus, particularly those that function in secondary ...of expressed sequence tags (ESTs) from ...sequence data generated from all ... See full document
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Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid
... responsive genes, which retarded leaf rolling, wilting, and loss of chlorophyll via ABA-dependent or independent pathways (Yamaguchi-Shinozaki and Shino- zaki, 2006; Weiner et ... See full document
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