[PDF] Top 20 First Worldwide Proficiency Study on Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Complex Strains
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First Worldwide Proficiency Study on Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Complex Strains
... National Tuberculosis Reference Labo- ratory, Tuberculosis and Thoracic Tumor Institute, Beijing, China; Stefan Niemann, National Reference Center for Mycobacteria, Forschungszen- trum Borstel, Borstel, ... See full document
8
Utility of New 24 Locus Variable Number Tandem Repeat Typing for Discriminating Mycobacterium tuberculosis Clinical Isolates Collected in Bulgaria
... circulating strains. A population-based study in Hamburg, Germany, concluded that 15- and 24-locus VNTR typing combined with spoligotyping represents the first PCR-based method with operating ... See full document
7
Evaluation of New Variable Number Tandem Repeat Systems for Typing Mycobacterium tuberculosis with Beijing Genotype Isolates from Beijing, China
... Molecular typing methods are generally and justly assumed to be useful tools for the resolution of various issues related to the classical epidemiology of human pathogens, including ...M. tuberculosis ... See full document
5
Use of Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing To Examine Genetic Diversity of Mycobacterium tuberculosis in Singapore
... losis complex species, such as ...M. tuberculosis strains, which have been shown to include mem- bers of the W/Beijing, Haarlem, and Africa families ...M. tuberculosis ge- notype families ... See full document
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New Variable Number Tandem Repeat Markers for Typing Mycobacterium avium subsp paratuberculosis and M avium Strains: Comparison with IS900 and IS1245 Restriction Fragment Length Polymorphism Typing
... the first feature, our results show that the flanking sequences and the polymorphisms of the eight MIRU-VNTR loci are sufficiently conserved between the two species to use the same PCR primers and loci for MIRU- ... See full document
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Occurrence and Nature of Double Alleles in Variable Number Tandem Repeat Patterns of More than 8,000 Mycobacterium tuberculosis Complex Isolates in The Netherlands
... proficiency study on VNTR typing in Europe and outsourced this to the RIVM to test the international intra- and interlaboratory repro- ducibility of VNTR ...the number of repeats and/or the PCR are ... See full document
10
Mycobacterium tuberculosis Beijing Genotype in Russia: in Search of Informative Variable Number Tandem Repeat Loci
... the number of targeted VNTR loci is ex- pected to achieve an increased discrimination that ultimately is close to that of ...A first-line screening may be reasonably limited to a few loci if they achieve a ... See full document
9
Discriminatory Power and Reproducibility of Novel DNA Typing Methods for Mycobacterium tuberculosis Complex Strains
... DNA typing methods have been developed which are faster and easier to perform than the current internationally standardized IS6110 restriction fragment length polymorphism typing ...novel typing ... See full document
11
Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Isolates with Low Copy Numbers of IS6110 by Using Mycobacterial Interspersed Repetitive Units
... M. tuberculosis isolates of different genetic groups are prevalent in different areas of the ...their study of IS6110 low-copy- number isolates collected in Houston, ...was first reported in ... See full document
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Three Year Population Based Evaluation of Standardized Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis
... smaller study on a different patient population in Germany (42% foreign-born patients, mostly from Turkey and eastern countries) (1, 12, 27), regarding the wide applica- bility of standardized MIRU-VNTR ... See full document
9
Characterization of Clonal Complexity in Tuberculosis by Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing
... by Mycobacterium tuberculosis is not ...M. tuberculosis by standard genotyping methods is laborious and frequently requires ...M. tuberculosis, mycobacterial interspersed repetitive unit– ... See full document
5
Optimization of Standard In House 24 Locus Variable Number Tandem Repeat Typing for Mycobacterium tuberculosis and Its Direct Application to Clinical Material
... standardized variable-number tan- dem-repeat (VNTR) typing in 2006 by Supply et ...ratories worldwide have implemented this ...(RFLP) typing method, that of 24- locus VNTR ... See full document
5
High Genetic Diversity Revealed by Variable Number Tandem Repeat Genotyping and Analysis of hsp65 Gene Polymorphism in a Large Collection of “Mycobacterium canettii” Strains Indicates that the M tuberculosis Complex Is a Recently Emerged Clone of “M canettii”
... suggested first by the MLVA data ...that tandem repeat loci may be under variable and specific evolutionary pressures, the clustering of strains by MLVA does make sense (15, ...growing ... See full document
8
Use of Multilocus Variable Number Tandem Repeat Analysis for Typing Mycobacterium avium subsp paratuberculosis
... RFLP typing of ...direct repeat region containing a 27-bp repeat and 12 ...avium strains with a DNA probe covering a large part of the direct repeat region of ...avium strains ... See full document
7
Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis
... Molecular typing based on 12 loci containing variable numbers of tandem repeats of mycobacterial inter- spersed repetitive units (MIRU-VNTRs) has been adopted in combination with spoligotyping as the ... See full document
13
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
... this study (Table ...RD typing. Further, the superior number of sublineages classified when compared with other SNP systems demonstrates improved strain-type resolution (Table ...MIRU-VNTR ... See full document
6
A snapshot of genetic lineages of Mycobacterium tuberculosis in Ireland over a two year period, 2010 and 2011
... repetitive-unit-variable-number tandem repeat typing alone was used to investigate the genetic lineages among 361 Mycobacterium tuberculosis strains circulating in ... See full document
7
Fast Ligation Mediated PCR, a Fast and Reliable Method for IS6110 Based Typing of Mycobacterium tuberculosis Complex
... developed variable-number tandem repeat (VNTR) typing methods (11, 11a, 14, ...VNTR typing differs according to the loci analyzed and between different strain families (11, 11a, ... See full document
6
Comparative Study of IS6110 Restriction Fragment Length Polymorphism and Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5 Year Nationwide Survey
... VNTR typing, because additional PGRS RFLP typing was used for strains with ⱕ5 copies of IS6110 (n ⫽ ...RFLP typing had significantly more confirmed or pre- sumed epidemiological links than ... See full document
6
Multilocus Variable Number Tandem Repeat Typing of Mycobacterium ulcerans
... ulcerans strains from the other geographic regions in ...this study supported the potential of a VNTR- based genotyping method for ...M. tuberculosis (8, 17, 19, 20, 25) and ... See full document
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