A weak correlation observed between proteome and transcriptome
Transcriptome, proteome and draft genome of Euglena gracilis
... gracilis transcriptome and the identified orthologs were then combined with the results of orthogroup clustering performed by OrthoFinder (see ...plastid proteome regardless of their targeting ...
23
Functional mapping of the zebrafish early embryo proteome and transcriptome
... deep proteome map of a selected 774 stage of early embryonic development in zebra ...embryo proteome. In addition, we also 777 performed transcriptome mining by RNA-seq to provide an 778 informative ...
16
Combined proteome and transcriptome analyses for the discovery of urinary biomarkers for urothelial carcinoma
... tissue transcriptome has advantages over the tissue proteome for this purpose because a greater proportion of the genome is typically covered, and upregulated secreted proteins may have elevated mRNA levels ...
8
Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast
... tion between down-regulated mRNAs and correspond- ing proteins could reflect that low abundance proteins are less reliably quantified by mass ...poor correlation reflects the biological reality of protein ...
14
Critical controllability in proteome-wide protein interaction network integrating transcriptome
... relationships between essential genes and their functional roles in critical network control at both the structural (protein interaction network) and dynamic (transcriptional) levels, in part because the large ...
14
Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome
... ences between the datasets were not only inevitable but also critical in understanding the various aspects of cellular process mechanism and ...the proteome and the ...
9
Integrative transcriptome and proteome analyses define marked differences between Neospora caninum isolates throughout the tachyzoite lytic cycle
... the weak correlation between gene expression and protein abundance highlighted the importance of post-transcriptional regulation in these ...the transcriptome of mechanisms involved in ...
45
Integrative transcriptome and proteome analyses define marked differences between Neospora caninum isolates throughout the tachyzoite lytic cycle
... Integrative transcriptome and proteome analyses define marked differences between Neospora caninum isolates throughout the tachyzoite lytic ...
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Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
... and transcriptome data for three cancer genomes were analyzed in conjunction with data on global protein ...values, correlation of those to genome alteration, sequence features, and so on), and subject them ...
13
The human platelet: strong transcriptome correlations among individuals associate weakly with the platelet proteome
... high correlation of both protein- coding transcript composition and abundance among different subjects, a result that is independent of race and of the employed technology; 2) a consensus plate- let ...
12
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.
... immunome, transcriptome, microbiome, proteome and metabolome of samples obtained simultaneously from the same ...interactions between different biological modal- ...
10
The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen.
... in transcriptome and proteome content, the developmental stages differ in their sensitiv- ity to abiotic stresses [ 15 ...occurs between meiosis and the first mitosis, whereas later developmental ...
21
Stage Specific Transcriptome and Proteome Analyses of the Filarial Parasite Onchocerca volvulus and Its Wolbachia Endosymbiont
... The relatively higher expression of Ov-CHI-1 in the L2 larval stages suggests a probable role in migration through insect tissues (https://exon.niaid.nih.gov/transcriptome/O_volvulus/ Additional_file_13.tif). The ...
11
Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson’s disease
... our transcriptome analysis did not identify any differentially expressed genes in the SVZ between control and PD patients, our proteome analysis revealed several proteins that were differentially ...
12
Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: Insights on the detection and discovery of viral genes
... Viral transcriptome data: green = MutuIII; purple = BC-1 latent; orange = BC-1 lytic; and red = ...Viral proteome data: purple = BC-1 latent, and orange = BC-1 ...
16
The cerebrospinal fluid immunoglobulin transcriptome and proteome in neuromyelitis optica reveals central nervous system-specific B cell populations
... our transcriptome and proteome data, is that NMO lesion formation is initiated following the transit of pathologic AQP4-IgG producing B cells to the ...Ig proteome indicates that CSF plasma- blasts ...
8
Parallel deep transcriptome and proteome analysis of zebrafish larvae
... high correlation if one considers the extreme differences between regulatory mechanisms at the level of transcription and transla- ...difference between the transcrip- tome and proteome ...in ...
8
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences
... and burden analyses. In particular, Bioconductor is a valuable resource for using and sharing packages and/or pipelines. NGS data undergo different QC steps with dedicated programs such as the Genome Analysis Toolkit to ...
19
Investigation of the adaptation of Lactococcus lactis to isoleucine starvation integrating dynamic transcriptome and proteome information
... A general negative response was observed on the expression of genes and proteins involved in major phy- siological processes. The functional category “ transla- tion ” was mostly, and very significantly (Wilcoxon ...
11
Transcriptome and proteome quantification of a tumor model provides novel insights into post‐transcriptional gene regulation
... To fragment peptides close to the apex of the elution signal, the chromatography feature was activated using a correlation of 0.8 and an expected peak width of 10 s. In all cases, one microscan was recorded. The ...
20