base pairs
Density functional theory studies on the geometry and electronic properties of Mitomycin C, DNA Base Pairs and their complex
... The polarizability and the dipole moment were computed to obtain information about the electron distribution in the intercalator and the base pairs. Polarizability is a property, depending on the second ...
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Computational Modeling of Interaction between Camptothecin and DNA Base pairs
... The binding interactions between CTTC and DNA base pairs were studied by means of DFTB quantum mechanical calculations. Geometrical and electronic properties of the isolated systems and their complexes ...
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Effect of Herbicide Terbutryn on the DNA Base Pairs: Design of New Herbicide with the Minimum Toxicity
... Watson-Crick base pairs (adenine (A) forms a base pair with thymine (T), as does guanine (G) with cytosine (C) in DNA) were optimized using DFT/B3LYP ...acid base pairs were studied ...
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Electronic and Geometry Studies on Swainsonine, DNA Base Pairs and its Complex
... acid base pairs were studied with the DFTB method, an approximate version of the DFT method that was extended to cover the London dispersion ...intercalator·DNA base pair ...
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ATP-Dependent Minor Groove Recognition of TA Base Pairs Is Required for Template Melting by the E1 Initiator Protein
... TA base pairs flanking the E1 ...inserted pairs of T residues at different positions in the A16 stretch on the top strand, generating the templates T10/11, T12/13, T14/15, T16/ 17, and T20/21 ...of ...
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DFT Calculations on the Effect of Solvation on the Tautomeric Reactions for Wobble Gua Thy and Canonical Gua Cyt Base Pairs
... these base-pairs were searched for by the STQN method [14] of G09, and the obtained TS struc- tures were confirmed to have a single imaginary fre- quency by the vibrational analysis of ...G-T base- ...
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Recognition of GC base pairs by triplex forming oligonucleotides containing nucleosides derived from 2-aminopyridine.
... even at a concentration of 50 µM. However, replacement of the dC with β-AP residues allows triplex formation at oligonucleotide concentrations as low as 0.25 µM, representing an increase in binding affinity of ...
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Structural and energetic properties of the four configurations of the А•Т and G•C DNA base pairs
... DNA base pairs are isoelectronic and isomorphic structures with similar dynamic ...DNA base pair, namely transformation of the tautomerised (Löwdin’s) G*⋅C* base pair with Watson-Crick ...
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Differentiation of Mycobacterial Species by PCR Restriction Analysis of DNA (342 Base Pairs) of the RNA Polymerase Gene (rpoB)
... These results suggest that PRA of rpoB DNA is a simple and feasible method not only for the differentiation of culture isolates but also for the rapid detection and identification of pat[r] ...
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Proton transfer and tautomerism in 2 aminopurine–thymine and pyrrolocytosine–guanine base pairs
... Figure S1 Change in energy of the optimised ground state S0 geometry as a function of H1 to N1 distance of both the gas phase and solution phase PC−G base pair for the proton transfer pr[r] ...
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RNAstrand: reading direction of structured RNAs in multiple sequence alignments
... GU base pairs in the consensus secondary structure of the reading direction of the input alignment (reverse comple- ment of the input alignment), and and are the numbers of all base pairs in ...
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On the interaction of actinomycin and DNA
... Therefore, if every GC base pair is intrinsically a binding site, the observation that only 1/2 of them are available for strong binding implies that the GC base pairs are not distribute[r] ...
151
DNA SEQUENCE ANALYSIS OF MUTAGENICITY AND SITE SPECIFICITY OF ETHYL METHANESULFONATE IN Uvr+ AND UvrB- STRAINS OF ESCHERICHIA COLI
... An analysis of mutation frequencies with respect t o neighboring base sequence, in the two strains, shows that 06-ethylguanine lesions adjacent to A:T base pairs present bette[r] ...
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Conserved nucleotides in the TAR RNA stem of human immunodeficiency virus type 1 are critical for Tat binding and trans activation: model for TAR RNA tertiary structure.
... Nucleotide substitutions in the two base pairs of the TAR stem directly above the essential trinucleotide bulge that maintain base pairing but change sequence prevent complex formation w[r] ...
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Base Pairing between the 5′ Half of ε and a cis-Acting Sequence, Φ, Makes a Contribution to the Synthesis of Minus-Strand DNA for Human Hepatitis B Virus
... proposed base pairs are required for minus-strand DNA .../ε base-paired secondary ...putative base pairing and a third variant that combined the single mutations to restore the predicted ...
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Supramolecular assembly and metal coordination in G quadruplex structures : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Chemistry, Massey University, Manawatu, New Zealand
... of base pairs (Watson-Crick or triazole-metal-triazole) the hybrid ON3/ON4 quadruplex would be expected to have a higher thermal stability than the ON3/ON3 assembly, thus the absence of the former also ...
140
Theoretical study of kinetics of zipping phenomena in biomimetic polymers
... Watson-Crick base-pairing rules, to a complementary single-stranded DNA molecule, each base pair on the single-stranded DNA molecule goes from an un- bound state 共 −1 state 兲 to a bound state 共 +1 state 兲 ...
5
Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S
... The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome... b).[r] ...
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PubMedCentral-PMC5159650.pdf
... direct base-pair detection to recover 100% of the base pairs in an ...U pairs due to a lack of sensitivity and high false-positive prediction rates, but these pairs are integral to many ...
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The Acceleration of DNA may Generate cancer
... entangled base pairs in DNA structures is ...AU pairs maybe produce in DNA structures due to decrease in entanglement between the existence of AT and non-existence of AU pairs in non inertial ...
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