CAV sequences used for multiple alignment analysis
ELIMINATE DUPLICATE URLs USING MULTIPLE ALIGNMENT OF SEQUENCES
... then used by a web crawler to avoid fetching DUST, including ones that are found for the first time during the ...criterion used to select these pairs and the availability of specific examples in the ...
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Inferring phylogenies of evolving sequences without multiple sequence alignment
... datasets used in this study are highly diverse, with various extents of within-set sequence divergence and data ...fragmented sequences (Supplementary Data). As per our analysis of simulated sequence ...
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TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
... Assigning multiple different genetic codes can be ac- complished either through interactive menus that help the user to define the code of each species, or using a predefined text file that can be copied and pasted or ...
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An Elitist Model for Obtaining Alignment of Multiple Sequences using Genetic Algorithm
... ABSTRACT: Multiple Sequence Alignment is a well known and computationally one of the most challenging problem in the field of molecular ...sequence analysis. An alignment is basically the ...
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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
... nucleotide sequences containing open reading frames was to use indirect procedures that align amino acid translation before reporting the inferred gap positions at the codon ...sequence alignment method was ...
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Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
... RNA sequences evolve more rapidly than the structure they are forming, because their evolutionary behavior fol- lows the structure-function paradigm: RNA molecules with different sequences but same or ...
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Cluster Analysis Method for Multiple Sequence Alignment
... the alignment of lengthy, highly variable or extremely numerous sequences that cannot be aligned solely by human ...nucleotide sequences). Computational approaches to sequence alignment ...
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Efficient Alignment of Very Long Sequences
... the analysis, we assume a single cache comprised of s lines of size w words (a word is large enough to hold a piece of data, typically 4 bytes) ...recently used) ...
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Multiple Sequence Alignment and Analysis: Part I An Introduction to the Theory and Application of Multiple Sequence Analysis.
... “pileup_10000”, “pileup_15000”, and “pileup_20000” respectively. Take home message: really huge alignments are possible; it depends on what you need for the biological questions that you are asking. But what about the ...
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Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences
... of sequences are gen- erated according to the “ descendant1-descendant2 ” scheme ...real sequences. However the PAM para- meter, used traditionally for characterizing the evolu- tional distance, is ...
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“A Heuristic Technique for Alignment of Multiple Biological Sequences Using Enhanced Evolutionary Algorithm” by Manish Kumar, India.
... First, a shorter segment from the parent is chosen at random, which is limited to 8≤ l≤ 90. Then the chosen segment is divided into two groups from a random chosen position. In each group, the column consisting of only ...
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Multiple sequence alignment algorithms for the phylogenic analysis of chloroplast DNA
... protein sequences are ...particular sequences so as to detect homologous sequences in other ...acid sequences to aid in inferring structural, functional and/or evolutionary relationships ...
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Digitalization of the Banking Industry: A Multiple Stakeholder Analysis on Strategic Alignment
... Customer perspective (CustReq): As the changing customer behavior is often described as a major driver of digitalization, we conducted a systematic literature review regarding the customer perspective. The three phases ...
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Clustering and Alignment of Polymorphic Sequences for HLA-DRB1 Genotyping
... are projected into diffusion space in which the Euclidean distance between two points is small if the points are highly connected in the original feature space and large otherwise. Then the K-means algorithm is applied ...
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ComPotts: Optimal alignment of coevolutionary models for protein sequences
... Coupling Analysis[ 11 ], a statistical method to extract direct correlations from multiple sequence ...align sequences to Potts models, and by us[ 14 ] with the introduction of ComPotts, our method ...
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OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences
... in-frame multiple sequence alignments. Commonly used alignment tools such as CLUSTAL and T- COFFEE [2,3] do not retain reading frame information, thus the achievement of in-frame alignments usually ...
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OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences
... in-frame multiple sequence alignments. Commonly used alignment tools such as CLUSTAL and T- COFFEE [2,3] do not retain reading frame information, thus the achievement of in-frame alignments usually ...
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T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
... final alignment and the library used by ...sidered alignment and its associated primary ...same sequences computed with different strategies for generating the primary ...the sequences ...
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T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
... final alignment and the library used by ...sidered alignment and its associated primary ...same sequences computed with different strategies for generating the primary ...the sequences ...
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Heuristics for multiobjective multiple sequence alignment
... Aligning multiple sequences arises in many tasks in ...the analysis and give too simplis- tic ...reformulate multiple sequence alignment from a multiobjective point of ...the ...
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