Clonal complex
Population Dynamics of an Acinetobacter baumannii Clonal Complex during Colonization of Patients
... Sequencing, assembly, annotation, and typing. Whole-genome DNA of the A. baumannii strains was purified using a Wizard genomic DNA purification kit (Promega) and sequenced on an Illumina HiSeq 2500 platform generating ...
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Emergence of Clonal Complex 17 Enterococcus faecium in The Netherlands
... the clonal spread of clonal complex 17 (CC17) ...the clonal spread of four MLVA types, and seems associated with acquisition of the esp ...
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Hospital Adapted Clonal Complex 17 Enterococcus Faecium Found among Sand Enterococcal Isolates
... resistance. This species has evolved in the last 15 years from an avirulent commensal to the third most frequently isolated nosocomial pathogen among intensive care unit patients in the United States [30]. Molecular ...
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Methicillin resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice
... Genetic analyses of the first MRSA by multi-locus sequence typing (MLST) demonstrated that they were sequence type (ST) 250, a lineage belonging to clonal complex (CC) 8 and carried the type I SCC mec ...
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Methicillin resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice
... Genetic analyses of the first MRSA by multi-locus sequence typing (MLST) demonstrated that they were sequence type (ST) 250, a lineage belonging to clonal complex (CC) 8 and carried the type I SCC mec ...
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The Epidemiology of Staphylococcus aureus and Panton Valentine Leucocidin (pvl) in Central Australia, 2006 2010
... CC, clonal complex; HA-MRSA, healthcare associated methicillin-resistant Staphylococcus aureus ; ICU, intensive care unit; MLST, multilocus sequence typing; MRSA, methicillin resistant Stpahylococcus aureus ...
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Prevalence and Genomic Structure of Bacteriophage phi3 in Human Derived Livestock Associated Methicillin Resistant Staphylococcus aureus Isolates from 2000 to 2015
... (LA-MRSA) clonal complex 398 (CC398) in animal husbandry and its transmission to humans are well documented, less is known about factors driving the epidemic spread of this zoonotic lineage within the human ...
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Prevalence of methicillin resistant Staphylococcus aureus (MRSA) infection and the molecular characteristics of MRSA bacteraemia over a two year period in a tertiary teaching hospital in Malaysia
... CC: Clonal complex; CDC: Centers for Disease Control and Prevention; CLB: cell lysis buffer; CLSI: Clinical and Laboratory Standards Institute; CSB: Cell suspension buffer; CSF: Cerebrospinal fluid; FOX: ...
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Functional and comparative genomics of Enterococcus faecium isolated from animals
... Volume/volume Weight/Volume Concentration Prophage attachment site Base pairs Chloramphenicol acetyl transferase Clonal complex-17 Clusters of Orthologous Group Enterococcal surface prot[r] ...
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Use of a Single Nucleotide Polymorphism Genotyping System To Demonstrate the Unique Epidemiology of Methicillin Resistant Staphylococcus aureus in Remote Aboriginal Communities
... common clonal com- plexes recovered from pyoderma lesions in communities 1 and 3 are shown in ...same clonal complex were recovered from two or more different lesions on the same person; while on 15 ...
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Characterization of methicillin susceptible and resistant staphylococci in the clinical setting: a multicentre study in Nigeria
... CC: Clonal Complex; PVL: Panton Valentine Leukocidin; ST: Sequence type; CNS: Coagulase negative staphylococci; HCIs: Health Care Institutions; MIC: Minimum Inhibitory Concentration; MLST: Multilocus ...
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Multilocus Sequence Typing Identifies Evidence for Recombination and Two Distinct Lineages of Corynebacterium diphtheriae
... Previous studies identified two predominant ribotypes asso- ciated with the FSU outbreak: Sankt-Peterburg and Rossija. Three isolates of each ribotype were analyzed by MLST. With the exception of isolate 13, discussed ...
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Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion
... major clonal complex and generalist lineage, ST-45 CC, by analysing the population structure and genealogy as well as applying genome-wide association analysis of 340 isolates from across Europe collected ...
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Universal antenatal screening for group B streptococcus colonisation in the UK
... British Paediatric Surveillance Unit Clonal complex Centers for Disease Control and Prevention Colony forming units Confidence intervals Cerebrospinal fluid Escherichia coli Early-onset [r] ...
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Distribution of SCCmec associated phenol soluble modulin in staphylococci
... There was no evidence for alternative locations of PSM-mec. Isolates lacking SCCmec elements, or harbouring SCCmec types I, IIC, IIE, IV and V were PSM-mec-negative regardless of clonal complex or species ...
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Continuing Diversification of Neisseria meningitidis W135 as a Primary Cause of Meningococcal Disease after Emergence of the Serogroup in 2000
... ET-37 clonal complex (14, ...ET-37 clonal complex, and ST-247 is a minor member of this clonal complex that differs from ST-11 by the allele of the fumC ...ET-37 clonal ...
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Typing of Campylobacter jejuni Isolates from Dogs by Use of Multilocus Sequence Typing and Pulsed Field Gel Electrophoresis
... a clonal complex. The most commonly identified clonal complex was ST-45 (11 isolates), followed by ST-21 (4 isolates), ST-508 (4 isolates), and ST-403 (3 ...
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IS element IS16 as a molecular screening tool to identify hospital associated strains of Enterococcus faecium
... hospital-associated clonal types (ST16, ST17, ST18, ST78, ST117, ST192, ST202, ST203) whereas the other 24 MLST types occurred only ...different clonal complexes which were in agreement with their ...
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Regional outbreak of community associated methicillin resistant Staphylococcus aureus ST834 in Japanese children
... Abbreviations att: Attachment site; CA-MRSA: Community-associated methicillin-resistant Staphylococcus aureus; CC: Clonal complex; CGE: Center for Genomic Epidemiology; DDBJ: DNA Data Ba[r] ...
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Cancer genomics: one cell at a time
... this complex disease and have begun to answer the fundamental ques- tions posed in this ...delineating clonal evolution and diversity in primary tumors [30,34,36,37,45,46], the field has begun to shift ...
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